Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4426g00012 ATGGCAGCTACAATGGATTTCTACAGTAGCAGACCACTCCAGTCAGATCCTTTCAGGGGTGAGTTGATGGAAGTGCTTGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTCTCCTTCCGCAGACTCATCCCCTTGTTCAAATTCCTCTCTACCTTCTACATCCTACTCTCCTCCTTCCCCCAACTCTTTCTTTTCTTCCCCATCAGTACCTTCACAGCCCAGTTTTCTGGCAGACGGTTGCTCCACGTCGATGACCCCTATATTTAGCGATGGGTTATCGAACAGCCTCAACACAATGGGTTTCGGGCAACCAAGCTCCGTTCTTGGGCTCAACCACCTAACCCCATCTCAGATTTACCAGATCCAAGCCCAGATCCAGCTCCAGAACCATCAAAACCCGTGTTGGCAGCAAAATAGTGCCAGCACCACCCTTGGCTTCTTGAGTCCCAAACCTATTCCCATGAAGCATACGGGTGTACCTCCCAAACCCACGAAACTCTACAGAGGTGTCAGGCAGCGTCACTGGGGAAAGTGGGTCGCCGAGATCAGGCTCCCTAAGAACCGCACTCGACTTTGGCTCGGTACCTTTGACACGGCCGAGGAAGCCGCCCTAGCCTATGACAAGGCTGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTCAACTTTCCCAACCTTCGACACCAAGGTTCTTGCGTCGGCGGCGAGTTCGGGGAGTACAAGCCACTCCATTCCTCTGTTGACGCCAAGCTTCAAGCAATATGCGAAAGTTTGGCCGATCTTCAGAGTCAGGGGAAGTCCGGGAAGTTGACGAGCTCATCCAAGAGGTCAGGGGGGCGGTCGAAAGCGGGTTCGAAAGATTCAAAGCCGGTGGCCAGCGAAGCCGGTGTGAAGGTGGAAAGCTCCTCGTCGCCGGCGACGACGGAGAGCGAGGGATCCGGCAGTTCTTCTCCCCTGTCTGATTTGACTTTTGCGGACGGGAGCGAGCCTCAGTGGGACGGGGTTCTGGATAATCTGAATCTGCAAAAGTACCCTTCTTACGAGATTGATTGGGCATCTCTGTGA 1065 0.5352 MAATMDFYSSRPLQSDPFRGELMEVLEPFMKSPSTTPSPSADSSPCSNSSLPSTSYSPPSPNSFFSSPSVPSQPSFLADGCSTSMTPIFSDGLSNSLNTMGFGQPSSVLGLNHLTPSQIYQIQAQIQLQNHQNPCWQQNSASTTLGFLSPKPIPMKHTGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICESLADLQSQGKSGKLTSSSKRSGGRSKAGSKDSKPVASEAGVKVESSSSPATTESEGSGSSSPLSDLTFADGSEPQWDGVLDNLNLQKYPSYEIDWASL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4426g00012 354 CDD AP2 166 226 IPR001471 GO:0003700|GO:0006355
Pral4426g00012 354 MobiDBLite consensus disorder prediction 1 69 - -
Pral4426g00012 354 FunFam Ethylene-responsive transcription factor 2 166 225 - -
Pral4426g00012 354 MobiDBLite consensus disorder prediction 297 324 - -
Pral4426g00012 354 MobiDBLite consensus disorder prediction 265 328 - -
Pral4426g00012 354 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Pral4426g00012 354 PRINTS Ethylene responsive element binding protein signature 190 206 IPR001471 GO:0003700|GO:0006355
Pral4426g00012 354 SUPERFAMILY DNA-binding domain 167 225 IPR016177 GO:0003677
Pral4426g00012 354 MobiDBLite consensus disorder prediction 265 279 - -
Pral4426g00012 354 ProSiteProfiles AP2/ERF domain profile. 167 224 IPR001471 GO:0003700|GO:0006355
Pral4426g00012 354 SMART rav1_2 167 230 IPR001471 GO:0003700|GO:0006355
Pral4426g00012 354 Pfam AP2 domain 168 216 IPR001471 GO:0003700|GO:0006355
Pral4426g00012 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 3 354 - -
Pral4426g00012 354 Gene3D AP2/ERF domain 167 225 IPR036955 GO:0003700|GO:0006355
Pral4426g00012 354 MobiDBLite consensus disorder prediction 31 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4426g00012 Pral-Chr4426 76618 78554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4426g00012 1 354 AP2-EREBP Transcription Factor Family AT1G78080 52.316 5.29e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4426g00012 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4426g00012 K09286 - qsa:O6P43_015285 386.726