Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4425g00009 ATGTCGCACTTTGGAAGATCTGGTCCTCCAGACATCAGAGACACCTATTCCCTTCTCGTCCTCAATATTACTTTCCGTACAACCGCTGACGATCTCTACCCCCTTTTTGACAAGTACGGCAAGGTCGTCGATGTCTTCATCCCCAGAGACCGAAGGACTGGTGAATCACGAGGCTTCGCTTTTGTTCGCTATAAGTATGCTGACGAGGCTCAGAAGGCAGTTGATAAGCTTGATGGAAGAGTGGTCGATGGAAGAGAAATTATGGTTCAATTCGCAAAATACGGACCTAATGCTGAGAAAATTCAAAAGGGCAGGATAGTGGAAACATCCTCCAAGCCAAGAGGGAGGTCAAGAAGCCGCAGCCCTCGTCCTAGGCATAGGGATGAATATAGAGACAGGGACTACAGGAGAAGAAGTCGCAGCAGAAGTAGGGAAAGATATGATCGTGACAAGTACCGTGAAAGGGATAGCCGTGAAAGGGATAGGGATTATCGTCGCCGGAGTAGGAGCCGTAGTGCAAGTCCTGATCGGCATAAAGATCGCAGGAGAGGAAGAGATGATGATGAGAGAAGAACTCGAAGCAGATCAGTTGATAGTGCATCACCTGCTCGGCATGGCTCCAGTCCTCGTAGAAGTCCATCTCCGCACAGGAGGTCTTCTCGAGATGAGCGACATGATGAACAGAATAGTCATGAGCAATCACCTGCACAGAAAGATGTTTCACCACGAGATCGTCCTATTGATTCTCGAAGCCCATCTCACAAATCTGACGCTGATGAATGA 783 0.4853 MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGESRGFAFVRYKYADEAQKAVDKLDGRVVDGREIMVQFAKYGPNAEKIQKGRIVETSSKPRGRSRSRSPRPRHRDEYRDRDYRRRSRSRSRERYDRDKYRERDSRERDRDYRRRSRSRSASPDRHKDRRRGRDDDERRTRSRSVDSASPARHGSSPRRSPSPHRRSSRDERHDEQNSHEQSPAQKDVSPRDRPIDSRSPSHKSDADE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4425g00009 260 Gene3D - 5 105 IPR012677 -
Pral4425g00009 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Pral4425g00009 260 MobiDBLite consensus disorder prediction 215 260 - -
Pral4425g00009 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pral4425g00009 260 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Pral4425g00009 260 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 243 - -
Pral4425g00009 260 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Pral4425g00009 260 CDD RRM_SRSF2_SRSF8 18 90 - -
Pral4425g00009 260 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pral4425g00009 260 MobiDBLite consensus disorder prediction 122 198 - -
Pral4425g00009 260 MobiDBLite consensus disorder prediction 102 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4425g00009 Pral-Chr4425 47792 50670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4425g00009 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 5.16e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4425g00009 K12891 - qsa:O6P43_019650 272.707