Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4425g00001 ATGGGAAGATCCCCTTGCTGCGATGAGAATGGCCTCAAGAAAGGACCATGGACTCCGGAGGAAGATGAGAAGCTTGTTCAGTACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCCAAGCTAGCAGGTCTGAATAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACCAATTATTTACGGCCTGACATCAAGAGAGGCAATTTTTCTGAAGAAGAAGAGCAAACCATACTGCATCTCCATTCCATCCTTGGAAACAAATGGTCGGCAATTGCATCCCATCTTCCGGGCAGGACTGATAACGAGATCAAGAATTTCTGGAACACACATCTAAAGAAGAAGTTAATTCAGATGGGTTTTGATCCAATGACCCACCAGCCACGAACAGATCTTGTTTCCACCTTGCCGTATCTGCTAGCTCTGGTCAACATGACAGACATTATGGATCACCACCACCTTCCTGCTTGGGATGATCAGGCTGTGAAACTTCAAGCAGAGGCAGTTCAGTTGGCAAAGCTTCAATATTTAAACTCCTTACTCCAACCCACGACTTCCTTGAACACCACCAACTCCTGCGACCAAAATGGCTTCACCACAAGCATGGATACTATCAATTTGTTAAATTCAATGGCTGATTTGAAAGAGAACCCAGGTATGAACTACCCACAGTTGAATAATCCAGGCTCATTAGCTTCTCAACCACTCCACCATCACCCCACCATGTTATCTCACATGCCAGACCCACCACAAGTCCCTTCCGCTCCCAATCATGTTTGA 780 0.459 MGRSPCCDENGLKKGPWTPEEDEKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGNFSEEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALVNMTDIMDHHHLPAWDDQAVKLQAEAVQLAKLQYLNSLLQPTTSLNTTNSCDQNGFTTSMDTINLLNSMADLKENPGMNYPQLNNPGSLASQPLHHHPTMLSHMPDPPQVPSAPNHV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4425g00001 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4425g00001 259 CDD SANT 69 112 IPR001005 -
Pral4425g00001 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4425g00001 259 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral4425g00001 259 CDD SANT 16 61 IPR001005 -
Pral4425g00001 259 MobiDBLite consensus disorder prediction 218 259 - -
Pral4425g00001 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4425g00001 259 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral4425g00001 259 Gene3D - 69 116 - -
Pral4425g00001 259 SMART sant 13 63 IPR001005 -
Pral4425g00001 259 SMART sant 66 114 IPR001005 -
Pral4425g00001 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4425g00001 259 Gene3D - 13 66 - -
Pral4425g00001 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4425g00001 259 FunFam Transcription factor MYB39 69 130 - -
Pral4425g00001 259 MobiDBLite consensus disorder prediction 220 234 - -
Pral4425g00001 259 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Pral4425g00001 259 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4425g00001 Pral-Chr4425 1417 2530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4425g00001 1 221 MYB Transcription Factor Family AT1G34670 66.957 5.42e-105 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4425g00001 Myb_DNA-binding 8.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4425g00001 K09422 - gmx:100811162 388.267