Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4423g00010 ATGGAATTTGAGGAGCACGACGAGCAGGAAGACGACATCGAGATCCCGGTGTCGCCTCCTGCTTACGACTCCCTCCCCAACAACTCTGTCCCCAGGTCCAAAATAAGTGTCTCCGGTGGAGCAGCAGCAGGAGCAGAGGGTGGCGCCTCTGCCGTCACACCTGGCCGCAAGGCTGAGCCCGGAGTAACAGCCAGGTACCGAGAATGCCAAAAGAACCACGCCGTCAGCCTCGGTGCACATGCGGTCGATGGCTGCGGAGAGTTCATCGCGGCTGGAGAGGAAGGCACGCTCGACGCGCTAAAATGCGCCGCCTGTAACTGTCACCGAAATTTCCACCGTAAGGAGACGGACAGCGGGGACATGACCCCGCATCCGCAGCTGCCGCCGCCGCCGCACTACCAGTACCACCAGCAGTATCCACCGTACTACCGTGCTCCTCCGCCACCAGCTGGGTACCTCCACCACCATCTGACGGCTCAGCCGATGGCGATGCAGAGGTCCTTGGCTCTGCCGGCTCCGGCGCCGATTAGAGATGAAGAGGACATGTCGAATCCTAGCAGCAGCGGAGGCGGAGGAAGCGGAGGCGGGGGAGGGAAGAAAAGGTGTAGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTCGCGGAGCGTGTCGGGTGGAGAATCCAGAAGCATGATGAAGCTGCGGTGGAGCAATTCTGTGCCGAGACTTGTGTCAAGAGACATGTACTTAAGGTTTGGATGCACAATAACAAGAACACTCTCGAGATTTCTGATCCAAGAGTGATACCATTTTATGCTCCTTTCGGCACAATTCTCGCTTGTTCATATGTACTACTTGTTGAAGAAGAGATACCTCGTCCTCCATTGATTGCTCAAAAGACTTTCAGTTATTGA 906 0.5651 MEFEEHDEQEDDIEIPVSPPAYDSLPNNSVPRSKISVSGGAAAGAEGGASAVTPGRKAEPGVTARYRECQKNHAVSLGAHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKETDSGDMTPHPQLPPPPHYQYHQQYPPYYRAPPPPAGYLHHHLTAQPMAMQRSLALPAPAPIRDEEDMSNPSSSGGGGSGGGGGKKRCRTKFTQEQKEKMLAFAERVGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKNTLEISDPRVIPFYAPFGTILACSYVLLVEEEIPRPPLIAQKTFSY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4423g00010 301 NCBIfam homeobox domain, ZF-HD class 199 256 IPR006455 -
Pral4423g00010 301 Gene3D - 184 261 - -
Pral4423g00010 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 115 IPR006456 -
Pral4423g00010 301 MobiDBLite consensus disorder prediction 175 202 - -
Pral4423g00010 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 258 - -
Pral4423g00010 301 MobiDBLite consensus disorder prediction 113 147 - -
Pral4423g00010 301 Pfam ZF-HD protein dimerisation region 64 116 IPR006456 -
Pral4423g00010 301 MobiDBLite consensus disorder prediction 1 59 - -
Pral4423g00010 301 MobiDBLite consensus disorder prediction 123 147 - -
Pral4423g00010 301 SUPERFAMILY Homeodomain-like 186 257 IPR009057 -
Pral4423g00010 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 115 IPR006456 -
Pral4423g00010 301 FunFam Zinc-finger homeodomain protein 2 188 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4423g00010 Pral-Chr4423 72287 74645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4423g00010 1 259 ZF-HD Transcription Factor Family AT4G24660 50.758 1.44e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral4423g00010 ZF-HD_dimer 7.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4423g00010 - - pcin:129294191 296.975