LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4420g00002	ATGGGTTCTTCTTCTTCTTCTTCTTGGCCAGTGATGGCCTTTGCAATTGCTTCTGCTGTTTGTGTGTTCTTCAGCTGCTTGATTACTGTATCATCACAAGATCAAAACCTTACTACCGATCCTTCTGAAGCGAGGAGTGTGAATAGAATATTCGAGAAATGGGGGATATTGGCATTACCAAATGTGTGGAACATCAGCGGTGAGCCGTGCAGCGGAAGAGCCGTCGACAGTACCACCACCATTGACTCCTTAAATCCATTCATCAAATGCGACTGCTCCGGCGGCACCACCTGCCACATTACTGCACTGAGGGTTTATGCATTGGATGTTGTTGGGGAAATCCCAGAAGAGCTATGGACACTGACTCACCTCACCAATTTGGACATCCGGCAGAATTACTTGACGGGTTCTCTACCTCTAGCCATTGGAAATCTAACTAGTATGCAGTACATGTCCTTTGGCATCAATTCTTTATCAGGAGAGATTCCGAAGGAACTGGGAAATCTTACTGAGTTAATATCATTGAGTCTTGCATCAAACAGCTTCTCAGGTTCTATTCCATTTGAGCTAGGAAATCTGGTGAAATTGCAACAACTCTACTTAATTAGTTCGGGACTTAGTGGTCAAATTCCTCCTACATTTGCTAATCTCAAAAACTTGCAGAAATTCTGGGCATCAGACATGGAACTCACTGGCAGGATACCTGACTTCATAGGAAGTTGGTCTAAGCTCATAGACTTGAGGCTTCAGGGTAATTCCTTTGAAGGACCAATACCATCATCATTGGGAAATCTGACTTCTCTTGTCGAGTTGAGAATAAGTGAAATATCTAATGGAAGCTCCTCACTGGCATTTATAAGGAATCTGAAGTCTTTGAATGTCTTAGTATTGAGAAATAACAATATTTCTGATTCAATTCCATCAGACATTGGTGAATTTCAGAGTTTGACACAGCTGGATTTAAGCTTCAACAATATCATGGGACAGATTCCAGGATCATTTTTCAATCTACGTTCACTAGCTTACTTATTTCTTGGAAACAACAAACTCAATGGCACTATCCCTACACAGATAAGCCCGTCTCTTCTCAATATAGACTTGTCCTACAACAGTTTATCAGGGGCTCCCTTTTGGGCGGACCAACCAAATTTACAAGTCAATTTGGTTGCCAACAACTTGACAATAAATTATTCAGATAGCAGTGGCCTTCCTTCTGGACTTGAATGTTTGCAGCGTAATTTTCCCTGTTTTCGCGGTCCTGGAAGATATTATGACTTTGCTATCAAGTGTGCTGGTCCTCAAATTACAACATCAGATGGAACTAAATTTGAAAGTGAGAAGGAGACACTTGGTGCTGCTACTTATTTTGTTACTGATACTAGAAGATGGGCAGTTAGCAATGTTGGGTTATTTACTGGTTCACACAATCCTCTATACAACAAATCTGTGCTTAGTCAGTTCACTAATACTTTAGACCCAGAGCTCTTCCAGACTGCCAGGATCTCTCCTTCTTCATTAAGATATTATGGCCTGGGCCTGGAAAATGGGGATTACAACATCTCCCTCTATTTTGCAGAAATGTCTATTCTAGACGCTACTACATGGAAAAGTCTAGGAAGACGATTTTTTGATATTTATATCCAGGGGAATCGTGTTTTGAAAGATTTTAACATAAAAAGGGAAGCTCGGGGGGCCTCTTTTAGAGCTGTCCAAAAGGATTTTCATGCTCATGTGTCAGAAAACTATCTAGAGATCCATCTCTTTTGGGCTGGAAAAGGGACCTGTTGCATACCAGATCAAGGTACATATGGCCCTATGATTTCAGCGATCAGAGCTAGCCCAGATTTCATTCCCACGGTCAGCAACAGACCTCCAACCAAGAAAAAGGACAGAACTGGTTTGATTGTGGGAATTGTTGTTGGTATTGGAGTAGTAAGCCTTCTGTCTTTTCTTGTGGTTTTTTGTATTATTCAGAGAAGAAAGCATCATGGAGATGGTGATGAAGAGCTCTTAGGTATTGATACGAAGCCATACACTTTTAGCTATTCTGAGTTAAAGAATGCTACAGATGACTTCAATCCTGGCAACAAGTTGGGCGAGGGAGGTTTTGGTCCTGTTTATAAGGGAACACTTAATGATGGAAGAGTAACTGCTGTGAAACAATTATCTGTAGGATCTCATCAAGGAAAGAACCAGTTTATAGCTGAGATTGCCACTATATCTGCCGTGCAACATCGTAATCTTGTTAAATTATATGGATGCTGCATTGAAGGAAATAAAAGGCTTCTTGTTTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGAAAATTGTTTAACTCTGAACTGGCCCACACGCTATGATATCTGCATGGGCATAGCAAGAGGTTTAGCTTATCTTCATGAAGAGTCTCGGCTCCGCATTGTGCATCGCGATGTAAAGGCTAGTAATATCCTGCTTGATCACAAGCTTGTCCCTAAAATATCTGATTTTGGTTTGGCCAAATTATACGATGATAAAAAGACGCATATAAGCACCCGTGTAGCTGGGACAATTGGATATCTTGCTCCGGAGTATGCCATGCGTGGGCACCTTACTGAGAAAGCAGATGTATTTTCCTTTGGTGTGTTAGCCCTTGAGATAGTTAGTGGGAGGCCAAATTCTGATTCAAACTTGGAAGGGGAGAAGATCTATCTTCTAGAATGGGCTTGGCAGCTGCATGAAAATAATTGTATAGTTGAATTGGTAGATCCTAAACTGTCATTAGATTTCAATGAGGAAGAAGTTAAAAGAGTTGTAGGGATATCTCTTCTGTGCACTCAAACTTCACCAATGGCAAGGCCAGCAATGTCTCGGGTTGTGGCAATGCTTTCTGGAGATATAGAAGTGAGCATTGTAAGTTCAAGGCCTGGTTACTTGGCGGACTGGAAATTTGACGATGAGGACAGCTTCATGACTGGCTTGGCCACAAAGGGATCAGAGACGAGTCAGTATAACTCATCCACTAGTACCACCATTGTCTCTGCTTCAATTGCAAACCAATCACCTCTAGATGCTTCTAAACCCATGCTTCGTCACATTCTTAGTGAAGGTAGATAA	3108	0.4138	MGSSSSSSWPVMAFAIASAVCVFFSCLITVSSQDQNLTTDPSEARSVNRIFEKWGILALPNVWNISGEPCSGRAVDSTTTIDSLNPFIKCDCSGGTTCHITALRVYALDVVGEIPEELWTLTHLTNLDIRQNYLTGSLPLAIGNLTSMQYMSFGINSLSGEIPKELGNLTELISLSLASNSFSGSIPFELGNLVKLQQLYLISSGLSGQIPPTFANLKNLQKFWASDMELTGRIPDFIGSWSKLIDLRLQGNSFEGPIPSSLGNLTSLVELRISEISNGSSSLAFIRNLKSLNVLVLRNNNISDSIPSDIGEFQSLTQLDLSFNNIMGQIPGSFFNLRSLAYLFLGNNKLNGTIPTQISPSLLNIDLSYNSLSGAXPFWADQPNLQVNLVANNLTINYSDSSGLPSGLECLQRNFPCFRGPGRYYDFAIKCAGPQITTSDGTKFESEKETLGAATYFVTDTRRWAVSNVGLFTGSHNPLYNKSVLSQFTNTLDPELFQTARISPSSLRYYGLGLENGDYNISLYFAEMSILDATTWKSLGRRFFDIYIQGNRVLKDFNIKREARGASFRAVQKDFHAHVSENYLEIHLFWAGKGTCCIPDQGTYGPMISAIRASPDFIPTVSNRPPTKKKDRTGLIVGIVVGIGVVSLLSFLVVFCIIQRRKHHGDGDEELLGIDTKPYTFSYSELKNATDDFNPGNKLGEGGFGPVYKGTLNDGRVTAVKQLSVGSHQGKNQFIAEIATISAVQHRNLVKLYGCCIEGNKRLLVYEYLENKSLDQALFENCLTLNWPTRYDICMGIARGLAYLHEESRLRIVHRDVKASNILLDHKLVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVLALEIVSGRPNSDSNLEGEKIYLLEWAWQLHENNCIVELVDPKLSLDFNEEEVKRVVGISLLCTQTSPMARPAMSRVVAMLSGDIEVSIVSSRPGYLADWKFDDEDSFMTGLATKGSETSQYNSSTSTTIVSASIANQSPLDASKPMLRHILSEGR	1036

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4420g00002	1036	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	279	402	-	-
	Pral4420g00002	1036	Gene3D	-	425	614	-	-
	Pral4420g00002	1036	Pfam	Protein tyrosine and serine/threonine kinase	696	961	IPR001245	GO:0004672\|GO:0006468
	Pral4420g00002	1036	FunFam	Os05g0263100 protein	44	278	-	-
	Pral4420g00002	1036	Gene3D	Transferase(Phosphotransferase) domain 1	769	970	-	-
	Pral4420g00002	1036	ProSiteProfiles	Protein kinase domain profile.	693	967	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4420g00002	1036	SUPERFAMILY	Protein kinase-like (PK-like)	676	973	IPR011009	-
	Pral4420g00002	1036	SUPERFAMILY	L domain-like	52	401	-	-
	Pral4420g00002	1036	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	29	1000	-	-
	Pral4420g00002	1036	SMART	serkin_6	693	959	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4420g00002	1036	FunFam	Leucine-rich repeat receptor-like protein kinase	662	768	-	-
	Pral4420g00002	1036	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	812	824	IPR008271	GO:0004672\|GO:0006468
	Pral4420g00002	1036	Gene3D	Phosphorylase Kinase; domain 1	656	768	-	-
	Pral4420g00002	1036	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	769	973	-	-
	Pral4420g00002	1036	Pfam	Malectin domain	426	611	IPR021720	-
	Pral4420g00002	1036	FunFam	Leucine-rich repeat receptor-like protein kinase	424	615	-	-
	Pral4420g00002	1036	CDD	STKc_IRAK	699	961	-	-
	Pral4420g00002	1036	Gene3D	Ribonuclease Inhibitor	198	415	IPR032675	-
	Pral4420g00002	1036	Gene3D	Ribonuclease Inhibitor	93	197	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4420g00002	Pral-Chr4420	135226	146891	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4420g00002	148	1036	Receptor kinase-like Gene Family	AT1G56120	61.883	0.0	1120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral4420g00002		PK_Tyr_Ser-Thr	1.7e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4420g00002	-		-	qsa:O6P43_001204	1484.93