Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4416g00004 ATGATCATGGCCGGAAACCCTAACTGGTGGAGCATGCATCCACCAACTTTGATCCCTCCTCAGTATGTGCTTGGATCTTCCTCAATTCCCATGAATTTCTTCACTGAAACCCAAGAAACTCCTCAGTCATGGAGCCAGATGCTTTTTGCTGGTTTACCTGGAGAAGAAGAGAGAATGGGGTCGAATCATTTTCAAGGCAAGAAGATGGAAAATTGGGAAGACCAGATTCTGCATAACGCATCCTCCAGAGCAGCTCCATCACCTCCTCTTGCTGTTGATGTAATAAAGCAAGAGGTTTCCCAAGGTGGTAACTTGTACGGCCATGGAAGTGAGGAGTTTCAGGCTTCAGCAGGATCTTCTCATGCCTCGTCCTCTTCTTATTGGCTAAGCAATATGATGCCCCCATCACTTATTCCTTCTAATTCTTCCCCTAAACCTCGTCAAATCACTACCTCAAGTAACAACACTGATAATATTTTGGATTTCACTTATAACAAGCCACATCATAACAATAATCAACCATCTGAGAGCAATAATAATAGCTCAGTGGCTTCTGGAGTTTGTAATAAGAAGGCTAGGGTTCAGGCATCTCCAAGCCAACCTCCCCTCAAGGTGAGAAAGGAGAAACTAGGCGATAGAATAACAGCACTTCACCAGCTAGTTTCCCCATTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATTAGATTCCTCCAAGGTCAAATTGAGGCACTAAGCTCGCCTTACTTGTCGAATGCATCGAAGAACATTAGGAATCAACACTCTGTACATGGAGAAAGGAATTCTGTGTTTCCTGAGGACCCGGGTCAGCTGTTGAATGACACTGGCCTCAAAAGAAAAGGAGCTTCAAACCAGGAAGGAGAAGAAAAGGCGAAGGACTTGAGGAGTAGAGGGCTGTGCTTGGTACCTGTGTCTTGCACCCAACATGTTGGCAATGAAAATGGAGCTGATTACTGGGCACCTGCTTATGCCAGCGGTTTTTAA 1020 0.448 MIMAGNPNWWSMHPPTLIPPQYVLGSSSIPMNFFTETQETPQSWSQMLFAGLPGEEERMGSNHFQGKKMENWEDQILHNASSRAAPSPPLAVDVIKQEVSQGGNLYGHGSEEFQASAGSSHASSSSYWLSNMMPPSLIPSNSSPKPRQITTSSNNTDNILDFTYNKPHHNNNQPSESNNNSSVASGVCNKKARVQASPSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLSNASKNIRNQHSVHGERNSVFPEDPGQLLNDTGLKRKGASNQEGEEKAKDLRSRGLCLVPVSCTQHVGNENGADYWAPAYASGF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4416g00004 339 FunFam Transcription factor bHLH123 family 204 267 - -
Pral4416g00004 339 MobiDBLite consensus disorder prediction 269 303 - -
Pral4416g00004 339 MobiDBLite consensus disorder prediction 138 196 - -
Pral4416g00004 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 68 321 - -
Pral4416g00004 339 CDD bHLH_AtbHLH_like 204 251 IPR045239 -
Pral4416g00004 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Pral4416g00004 339 Gene3D - 204 268 IPR036638 GO:0046983
Pral4416g00004 339 MobiDBLite consensus disorder prediction 138 204 - -
Pral4416g00004 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 256 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4416g00004 Pral-Chr4416 20911 25799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4416g00004 54 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 44.747 9.11e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4416g00004 - - gmx:100806379 424.476