Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4416g00002 ATGTTTAGACTACTGGAACATGATTACATAGGCTTATCAGAGAACCGTTCCATGGACATCTCTGAAAAGAGCTCGCGTCTCAACTTGAAGGAGACAGAGCTCAGGCTTGGGCTTCCTGGTTGTGAGTCTCCAGAGAGAAAGTCAACAAATGTAATATCTCTGTTTGGGAAGGATTTGCAGAACACAACCGCTTCGAAGAACATTGTTGCTGGCTCTAAGAGAGGCTTCTGTGATGCCATTAAGGAAGGGTCCTCCAGGAAATGGGTTTTTCAAGAGAGTGATAATGAATCTGATGATGCCATTGTCGGCCTTGAGGGTAAAAGAAATAATACCCACAAGGCTCCTCAATCTGCCAAACTAAGCCATGATAAGAAGCATGAGGTTTCTGCAACACACGAGCATGCCAGTCCTCCTTCTGCAAAGGCCCAGGTTGTGGGGTGGCCTCCGATTCGATCCTATCGGAGAAACACGATGGCCTGTAGCTTGACAAAGAACAACGACGATGAAGAAGAGGGAAAACCAGAAGCATGTGGTTGTCTCTATGTAAAAGTTAGTATGGATGGTGCTCCATATCTCAGAAAGGTTGATCTAAGCATGTACACAGACTATATGCAACTTTCTTCAGCCCTTGAGCAAATGTTCACCTGCTTCACTGTTGGTGAATGCGCTTCTGGTGGGTTTCCTGGGAAAGATGGTCTGAGTGAGAGCTCTTTGAGGGATCTTCTTCATGTGTCTGAATATGTTGTTACATATGAAGACAAGGATGGAGATTGGATGCTTGTTGGTGATGTCCCATGGGAGATGTTCACTGAATCATGTAGGAGACTGAGGATCATGAAAGGTTCTGAAGCAATTGGGCTAGCTCCCAGGGCCGTGGAAAAATGCAGGAGCCAGAACAACTGGAGAAGAATCAAATAG 918 0.4564 MFRLLEHDYIGLSENRSMDISEKSSRLNLKETELRLGLPGCESPERKSTNVISLFGKDLQNTTASKNIVAGSKRGFCDAIKEGSSRKWVFQESDNESDDAIVGLEGKRNNTHKAPQSAKLSHDKKHEVSATHEHASPPSAKAQVVGWPPIRSYRRNTMACSLTKNNDDEEEGKPEACGCLYVKVSMDGAPYLRKVDLSMYTDYMQLSSALEQMFTCFTVGECASGGFPGKDGLSESSLRDLLHVSEYVVTYEDKDGDWMLVGDVPWEMFTESCRRLRIMKGSEAIGLAPRAVEKCRSQNNWRRIK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4416g00002 305 MobiDBLite consensus disorder prediction 104 144 - -
Pral4416g00002 305 FunFam Auxin-responsive protein 174 291 - -
Pral4416g00002 305 Pfam AUX/IAA family 31 290 IPR033389 -
Pral4416g00002 305 ProSiteProfiles PB1 domain profile. 179 281 IPR000270 GO:0005515
Pral4416g00002 305 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 26 286 IPR003311 GO:0005634|GO:0006355
Pral4416g00002 305 Gene3D - 175 293 - -
Pral4416g00002 305 MobiDBLite consensus disorder prediction 117 132 - -
Pral4416g00002 305 SUPERFAMILY CAD & PB1 domains 179 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4416g00002 Pral-Chr4416 9408 11197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4416g00002 156 299 B3 DNA Binding Superfamily AT2G46530 27.083 1.79e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pral4416g00002 AUX_IAA 1.5e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4416g00002 K14484 - gmx:100804423 389.808