LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4408g00025	ATGGTTTCAGCGCTGACGCATGTGGTATCTGGATCTGGTGGTCAGGGACGCACCGAATGGATACCTGTGACGTCACCTCTTGTCCAGCCTTCGCTTCCTTCTTCTTCTGTTTTGTCGCCTTACTTGTCTTCTTCTTCTTCTTCATCTTCTTCTGCTTCAGGCTCTGTTTTGAGCTCTGCTTCTGGTTCTACCGCTTCCGCTGGCCAAAAACGAGCACGTGACCAGCAGAGCTGTGTCTATGGAGCTTTCACTGACTTCAGAGTCCCCTCGCAGGGACAATCATCTTCTGTGACAGAGGAGGGGACGAATGTTGCACCCGGTGTGATGGTGGAGACGGCGGCAGCGACGGCTGAGGAAAGCGGTGAGAGGAGGAGAAGGTACAGAGGAGTGAGACAAAGACCGTGGGGGAAATGGGCAGCCGAAATTCGTGATCCGCACAAGGCGGCGAGAGTCTGGCTTGGTACATTCGACACGGCGGAGGCTGCCGCCAGAGCTTACGATGAAGCTGCATTGAGATTCCGAGGAAACAGAGCAAAGCTGAATTTCCCGGAAAATGTCAGAGTAGTACCCCCTGCTCACAACTTTCCTGCCACTCGCCCCGCGGCATCGGATTCTCGGGCGATTCATTTCCAGCAACAGACTCCTAATCTTCCTCCTCCACCTCCTCCACCGCAGCCGCAGTTCTTACAGTCACCGTCTTTTCAGACCCCACCGGATTTAATCAGAGATTATTGGGAATATTCTCAGCTGCTTCAGAGCTCCGACGAGTTCCAACAACAACAACAACGTCAGCAATCCCAACAACAACATTCGAATTTGTTACAACAATGGTTATACAATTCACAATTGGCGGCGCTTCAATCGTCTTCTTTGTTATTATCATCGTCACCCCTGTCTTCTTCTTCGTCCCCAACAGCATTCTCACCTTCAAGCCAGCTATCCTCTGCTTCATTTCCCCTGTTTTCCAGTCAGCATTCAGGTTACTTCCGGCCACCAGGAAACGCACAGAGCGGCAGTGGCGGCGACATCGGCGGTGGGTCACACTTTCCGGCGTCAACTTGGTCAGATACTAGTGGCTACCCTCCTCCATCCGGTCCAGGCTGA	1104	0.5281	MVSALTHVVSGSGGQGRTEWIPVTSPLVQPSLPSSSVLSPYLSSSSSSSSSASGSVLSSASGSTASAGQKRARDQQSCVYGAFTDFRVPSQGQSSSVTEEGTNVAPGVMVETAAATAEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRVVPPAHNFPATRPAASDSRAIHFQQQTPNLPPPPPPPQPQFLQSPSFQTPPDLIRDYWEYSQLLQSSDEFQQQQQRQQSQQQHSNLLQQWLYNSQLAALQSSSLLLSSSPLSSSSSPTAFSPSSQLSSASFPLFSSQHSGYFRPPGNAQSGSGGDIGGGSHFPASTWSDTSGYPPPSGPG	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4408g00025	367	SMART	rav1_2	126	189	IPR001471	GO:0003700\|GO:0006355
	Pral4408g00025	367	MobiDBLite	consensus disorder prediction	25	73	-	-
	Pral4408g00025	367	MobiDBLite	consensus disorder prediction	1	20	-	-
	Pral4408g00025	367	Gene3D	AP2/ERF domain	125	185	IPR036955	GO:0003700\|GO:0006355
	Pral4408g00025	367	MobiDBLite	consensus disorder prediction	294	367	-	-
	Pral4408g00025	367	MobiDBLite	consensus disorder prediction	211	233	-	-
	Pral4408g00025	367	Pfam	AP2 domain	126	175	IPR001471	GO:0003700\|GO:0006355
	Pral4408g00025	367	CDD	AP2	134	185	IPR001471	GO:0003700\|GO:0006355
	Pral4408g00025	367	FunFam	Ethylene-responsive transcription factor 2	125	184	-	-
	Pral4408g00025	367	PANTHER	DNA-BINDING DOMAIN	63	273	IPR044808	GO:0003700\|GO:0009873
	Pral4408g00025	367	MobiDBLite	consensus disorder prediction	294	333	-	-
	Pral4408g00025	367	SUPERFAMILY	DNA-binding domain	126	184	IPR016177	GO:0003677
	Pral4408g00025	367	MobiDBLite	consensus disorder prediction	214	231	-	-
	Pral4408g00025	367	ProSiteProfiles	AP2/ERF domain profile.	126	183	IPR001471	GO:0003700\|GO:0006355
	Pral4408g00025	367	MobiDBLite	consensus disorder prediction	25	74	-	-
	Pral4408g00025	367	PRINTS	Ethylene responsive element binding protein signature	127	138	IPR001471	GO:0003700\|GO:0006355
	Pral4408g00025	367	PRINTS	Ethylene responsive element binding protein signature	149	165	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4408g00025	Pral-Chr4408	481047	482809	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4408g00025	118	190	AP2-EREBP Transcription Factor Family	AT2G33710	78.082	6.39e-36	129

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pral4408g00025		AP2	6.8e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4408g00025	-		-	pcin:129292679	226.098