Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4407g00021 | ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGGTTTGGGAGCTTATCGAGGCGGAGTTTTGAGGTGAGGCTTCCTGGCCATCATAGGAAGTCTCAAAGCTCAGTACACGAGTTGCAGGACCAAGCTCCTGTCATACAGAACAGCCGTTGGGCCAGCCTTCCGCCAGAGCTTCTTCGTGATGTTATCAAAAGATTGGAAACAAGTGAGAGTACCTGGCCTGGCCGTAAACATGTAGTTGCTTGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGTAAAGAAATTGTGAGCAGTCCAGAGTTCTCTGGGAAGATTACTTTCCCTATTTCCCTTAAGCAGCCTGGATTCAGGGATGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACATACCATCTGTTCCTTTGCCTTAGTCCTGCACTGCTTGTTGAAAATGGAAAGTTTCTTTTATCGGCTAAAAGGACAAGAAGAACTACGTGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTACTAGGTACATTGGAAAATTGAGGTCAAACTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTACAATAATTCTCAGCTGTCTCCACCTGGCCGAAGTCGTAGGTTTTATTCAAAAAAGGTTTCCCCAAAAGTCCCTAGTGGCAGCTACAATATTGCTCAGGTCTCTTATGAGCTTAATGTGCTAGGTACTCGTGGACCTCGTCGAATGCACTGTACCATGTACTCAATCCCCACATCATCTCTTGAGCCGGGTGGCATTGTCCCAGGCCAACCTGAGCTTCTTCCCCGCTCCCTTGAGGATTCGTTCAGAAGTATATCCTTCTCAAAATCAATTGACAATTCGACTGAGTTTAGCAGCTCTAGGTTCTCGGACATAATGGGTCCCGGAAACGAGGAGGAGGAAGGCAAGGAGAGACCATTAGTTCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGGAGGGTGACAGTTGCATCTGTAAAAAATTTTCAGCTGATTGCAGCAACTTCACCACCTGCACCGGGTGGCCCGACACCAGCACAGCCATCGCAGCCTTCGCAATCTGATCACGACAAGATCATTCTTCAGTTTGGCAAGGTTGGCAAGGACATGTTCACCATGGATTATAGATATCCCCTATCAGCATTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCATGTGAATAG | 1284 | 0.4634 | MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRKSQSSVHELQDQAPVIQNSRWASLPPELLRDVIKRLETSESTWPGRKHVVACAAVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSTRYIGKLRSNFLGTKFIIYDTQPPYNNSQLSPPGRSRRFYSKKVSPKVPSGSYNIAQVSYELNVLGTRGPRRMHCTMYSIPTSSLEPGGIVPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSSRFSDIMGPGNEEEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPPAPGGPTPAQPSQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE | 427 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4407g00021 | 427 | ProSitePatterns | Tub family signature 2. | 412 | 427 | IPR018066 | - | |
Pral4407g00021 | 427 | PRINTS | Tubby superfamily signature | 345 | 361 | IPR000007 | - | |
Pral4407g00021 | 427 | PRINTS | Tubby superfamily signature | 384 | 403 | IPR000007 | - | |
Pral4407g00021 | 427 | PRINTS | Tubby superfamily signature | 405 | 427 | IPR000007 | - | |
Pral4407g00021 | 427 | PRINTS | Tubby superfamily signature | 233 | 260 | IPR000007 | - | |
Pral4407g00021 | 427 | PRINTS | Tubby superfamily signature | 168 | 184 | IPR000007 | - | |
Pral4407g00021 | 427 | PRINTS | Tubby superfamily signature | 327 | 344 | IPR000007 | - | |
Pral4407g00021 | 427 | PRINTS | Tubby superfamily signature | 184 | 208 | IPR000007 | - | |
Pral4407g00021 | 427 | FunFam | Tubby-like F-box protein | 47 | 100 | - | - | |
Pral4407g00021 | 427 | SUPERFAMILY | F-box domain | 44 | 96 | IPR036047 | GO:0005515 | |
Pral4407g00021 | 427 | Gene3D | - | 47 | 100 | - | - | |
Pral4407g00021 | 427 | PANTHER | TUBBY-RELATED | 39 | 425 | - | - | |
Pral4407g00021 | 427 | SUPERFAMILY | Tubby C-terminal domain-like | 101 | 427 | IPR025659 | - | |
Pral4407g00021 | 427 | CDD | F-box_AtTLP-like | 52 | 96 | - | - | |
Pral4407g00021 | 427 | Gene3D | Tubby Protein; Chain A | 111 | 427 | IPR025659 | - | |
Pral4407g00021 | 427 | MobiDBLite | consensus disorder prediction | 303 | 323 | - | - | |
Pral4407g00021 | 427 | FunFam | Tubby-like F-box protein | 109 | 427 | - | - | |
Pral4407g00021 | 427 | Pfam | F-box domain | 52 | 99 | IPR001810 | GO:0005515 | |
Pral4407g00021 | 427 | Pfam | Tub family | 113 | 422 | IPR000007 | - | |
Pral4407g00021 | 427 | ProSitePatterns | Tub family signature 1. | 345 | 358 | IPR018066 | - | |
Pral4407g00021 | 427 | MobiDBLite | consensus disorder prediction | 362 | 383 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4407g00021 | Pral-Chr4407 | 497646 | 501973 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4407g00021 | 1 | 427 | TUB Transcription Factor Family | AT1G76900 | 70.588 | 0.0 | 611 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Pral4407g00021 | Tub | 3.3e-116 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4407g00021 | K19600 | - | qsu:111992792 | 762.296 |