Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4407g00016 ATGATGCAGCTTGGAGACCCTACTACAGTAGTCGTCTCAGAGATGGTTGCTACGGCGGCCGAAGCACCGCCTGCTCCGCCGCCACGGCCACCACAGGAAGCCGCCACCGAGGCGCCAGACGGGGGTGGCGTGATCATAATCACAGCAACTTCATCAGGTGAAGGCGACAATAAGATGAACAGTGGAGGGAACCGGTGGCCCCGCCAAGAGACTTTGGCTCTGTTGAAGATAAGGTCTGATATGGATTCTGTGTTTCGAGATTCAAGTCTTAAAGGTCCACTCTGGGAAGAAGTTTCAAGGAAGCTAGGGGAGCTTGGTTATCAGAGAAGTGCAAAGAAATGCAAGGAGAAATTCGAGAACGTGTACAAGTATCACAAGAGAACCAAAGATAGCAGAAGTGCTAAACCAGAAGGAAAGACCAAAACCTATAGGTTTTTTGATCAATTAGAAGCTTTTGAATCTCGATTCACTCTTTCTCATAACCCTCAATCTCAATCTCATCCTCCTCCAAAATCTCTATCACAACCTTCTTCTAATAATTTCCCTCCAAATGCACTTCCTACCTCATTGCCATTTCTCTCAACAAGGCCCAGTGATCATTCATCAACTACCTTCTCTTACGTCACTGGTGGGACAACTACTGCTATTAATACAACTCTTCCTTCCTCGAATAATCCTCCTCCGGCGGCGGCAGTGGTGGTGCCGAATGCGAACCTTTCGACGTCGACCTCGTCGTCCACGGCCTCCGACGAGGACCTTCAGGATAGGTACCGGAAGAAGAGGAAGTGGAAGGACTACTTCAGGCGGCTCACAAGGCGAGTACTGGCTAGACAGGACGAAATGCAGAAGAGGTTCTTGGACGCCATTGATAAACGAGAACGTGAGCGTGTGGCTCAGCAAGAAGCTTGGAGGATGCAAGAAATGGCTCGGATCAACCGTGAACATGAAATCCTCGTTCAAGAAAGATCCACCGCCGCCGCCAAGGACGCCGCCATCATTGCATTCTTACAGAAGTTGTCCGGAGGATCACAGCAGCCTCCTCCGTCGACACCGCGGGTGTCGGTGGTGTCACAGTTTCAACCACAACCACAACAGCAGCAAAACCAGCAGGCACTGTTGGTTGTGATGCCACCAAATAATAACATCAGCTATGAAAAGTTTGAAATCCAGAAAATGGATAATAACAATCACAATATCAACGGCAGTGGCGGCGGCGGGGTTGGGGCTCCTTCACGGTGGCCGAAGGCGGAGGTACATGCGTTGATAAGGCTGAGGACAAGGCTGGAGGCTAAGTACCAGGAAAACGGCCCGAAAGCTCCTTTGTGGGAGGAAATATCCAGTGAAATGCGGAAGATGGGGTACAATAGGAATGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGATCAAAGAAAGTAACAAACAAAGGCGTGAGGATAGCAAAACTTGTCCTTACTTCAATGAGCTCGAGGCTATATACAAAGAAAAGACCAAAACCCAGAACAACAACCACAACCACCTCTTCGGTGATCCATTTGGTCACAATATAGCGCCATTAATGGTCCAGCCAGAGCAGCAATGGAGGCCTCCCACTCAAGAAGAAGAAGCCGCAAGAGGTTATCAAGAATGTGAAGAAGAAGACGACGACAACTACGAAGATGAAGGAGGGGTTGAAGAAGAAGATGGAGGAAGTATTGACTTAGAAGATGAAGAAATAGCAGCAGGAGGAGGACGCCCTGGCGGCGGCTGCGGCGCTAGTGGCGGTGATGACAACGGTGGCTATGAGAATATTAACTCTAAAAATAAACTTGCTTCAGTGGACACCGTTGAATGA 1851 0.4911 MMQLGDPTTVVVSEMVATAAEAPPAPPPRPPQEAATEAPDGGGVIIITATSSGEGDNKMNSGGNRWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLGELGYQRSAKKCKEKFENVYKYHKRTKDSRSAKPEGKTKTYRFFDQLEAFESRFTLSHNPQSQSHPPPKSLSQPSSNNFPPNALPTSLPFLSTRPSDHSSTTFSYVTGGTTTAINTTLPSSNNPPPAAAVVVPNANLSTSTSSSTASDEDLQDRYRKKRKWKDYFRRLTRRVLARQDEMQKRFLDAIDKRERERVAQQEAWRMQEMARINREHEILVQERSTAAAKDAAIIAFLQKLSGGSQQPPPSTPRVSVVSQFQPQPQQQQNQQALLVVMPPNNNISYEKFEIQKMDNNNHNINGSGGGGVGAPSRWPKAEVHALIRLRTRLEAKYQENGPKAPLWEEISSEMRKMGYNRNAKRCKEKWENINKYFKKIKESNKQRREDSKTCPYFNELEAIYKEKTKTQNNNHNHLFGDPFGHNIAPLMVQPEQQWRPPTQEEEAARGYQECEEEDDDNYEDEGGVEEEDGGSIDLEDEEIAAGGGRPGGGCGASGGDDNGGYENINSKNKLASVDTVE 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4407g00016 616 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Pral4407g00016 616 MobiDBLite consensus disorder prediction 545 574 - -
Pral4407g00016 616 CDD GT1 64 129 - -
Pral4407g00016 616 MobiDBLite consensus disorder prediction 50 67 - -
Pral4407g00016 616 FunFam Trihelix transcription factor GT-2 66 127 - -
Pral4407g00016 616 SMART sant 62 124 IPR001005 -
Pral4407g00016 616 SMART sant 409 471 IPR001005 -
Pral4407g00016 616 MobiDBLite consensus disorder prediction 598 616 - -
Pral4407g00016 616 Gene3D - 413 474 - -
Pral4407g00016 616 Gene3D - 66 127 - -
Pral4407g00016 616 CDD GT1 411 476 - -
Pral4407g00016 616 MobiDBLite consensus disorder prediction 531 616 - -
Pral4407g00016 616 MobiDBLite consensus disorder prediction 14 67 - -
Pral4407g00016 616 Pfam Myb/SANT-like DNA-binding domain 411 498 IPR044822 -
Pral4407g00016 616 Pfam Myb/SANT-like DNA-binding domain 64 151 IPR044822 -
Pral4407g00016 616 MobiDBLite consensus disorder prediction 159 206 - -
Pral4407g00016 616 ProSiteProfiles Myb-like domain profile. 411 469 IPR001005 -
Pral4407g00016 616 PANTHER FI21293P1 27 547 - -
Pral4407g00016 616 FunFam Trihelix transcription factor GT-2 413 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4407g00016 Pral-Chr4407 389270 391921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4407g00016 52 532 Trihelix Transcription Factor Family AT1G76890 47.338 2.00e-135 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4407g00016 Myb_DNA-bind_4 2.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4407g00016 - - pcin:129303652 568.926