Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4407g00014 ATGCTGGGGGACTCATCGTCGGCTGTATTGGGTGGCGGGGGAGGAGGAGGAGGCGGCGGTGGCGGTGGTAACTCTTCTGATGCAGTGGCGCCGACAGTTGTGGCTGCAGCAGCAGGAACGACGTCTTCCCATGACGGTGGCGAGTCGACAGCAGCGGCCGCGGCCGCAACAGCAGCTGGATCGAATTCCGGCGAGGAAGATGTGAGGGGAAGAGGAGAAGAAGGTGACCGGAGCTTCGGCGGCAACCGGTGGCCCCGGCAAGAGACTTTGGCGCTCTTAAAAATGCGTTCGGACATGGACGTGGCGTTTCGAGATGCTAGCGTTAAAGGTCCTCTCTGGGAAGAAGTTTCCAGAAAAATGGCAGAGCTTGGGTATCACAGAAGCGCCAAGAAATGTAAAGAGAAATTTGAGAACTTGTATAAGTACCATAAGAGAACAAAAGACGGCCGAACTGGGAAATCTGAAGGCAAAACGTATCGTTTCTTTGAACAGTTAGAAGCTCTTGATCATCAAAACCATCCTCCTCCTCCTCCTCCCCCCTCACGGCGGCCACCGCAAGCTCCGCCGTCGCAGTTATTAGCAATACCTGCAACACCAGTTTCAGTGGTGGCGACGATGCCGTTACCGTCCACAAATGTTAATAATCCTCCTCCACCTCCTCATCATCATCTCTCTACTGTTCCATCAACGATCACACCTCAACCCTGTAATAATGTTCTCACTCCTCCACCTATCAACCTCACTTCTTCCACCATTAATAATCCTCCTCCCTACAATATTTTCCCCAGGCCGCCGCCGCCGCCGTCTACATCAACAGCAAACCCTATCCAATCTTCTTTCCCGACCGACTTGTTGTCCAATTCTCCGTCTTCGTCGACCTCCTCCGATGAGTCCATAGAGCGGCGGCAACGGCGGAAGCGGAAGTGGAAGGACTTCTTTGGAAGGCTGACGAAGAAGGTTATAGAGAAGCAAGAGGCAATGCAGAAGAGACTATTGGAAGCCATTGAGAAGCGAGAACATGAAAGGATGGTTCGTGAAGAAGCTTGGAGAATGCAGGAAATGGCGAGGATTAATCGAGAGCGTGAAATATTGGCACAGGAAAGATCTGTAGTGGCTTCCAAGGACGCTGCTGTTATGGCATTATTACAGAAGATCGCCGAACAGCAAAACCTCCGCCTCCCACTGAATAATATCAACATTTCACCTCCTCCCACGGCGCCGCCACTGACGGCTCAACCAACAGCACAACGAGCACCGGCTCCGGCTCCTCCGGCGGCTCAGCCACAGATGATGACCTCGGTGACAAACATGGAGATTGTGGCGACTGATAATAATAATAGCAACAATGGGGAGAATAATTTGATGGCACCAAGCTCGTCAAGGTGGCCGAAAGTGGAGGTTGAGGCATTGATAAAGCTAAGAACGAGCATGGACGAGAAGTACCAAGAGAATGGGCCAAAAGGGCCGCTGTGGGAGGACATCTCGGCGGCGATGAGGCTGCTTGGGTACAACAGAAACGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATAAACAAGTACTTCAAGAAGGTGAAAGAAAGCAACAAGAAGAGGCCTGAAGATTCCAAGACCTGTCCGTATTTCCACCAGCTAGATGCTCTTTACAGGGTGAAGAACAAGCTTGAGATGATCAATACTCCTCCTCCGCCATCATCCGCAGCCGCCACCACCGTAAATCATAGCCTGAATCCGGCAGATAATGATAATATCACCACACCGTCATCGGCGCCCCCGCTGATGGTTCAGCCGGAGCAGCAATGGCCTCCCCAGCAAGACACATCAAGGGAAAACAACAACAACAACAATGCAGGGTTGGAAGAGGAGGAGGAAGAAGAAGAAGACGACATGGACGAAGAGAAGGATATTGAAGACGAAGATGATGAAGAAGAAGACGAGGAAGGAGGTGGCAGTTATGAGATAGTAGCAAGCAAGCCAGCTTCAGTGAATGCAGCTGAGTGA 1998 0.517 MLGDSSSAVLGGGGGGGGGGGGGNSSDAVAPTVVAAAAGTTSSHDGGESTAAAAAATAAGSNSGEEDVRGRGEEGDRSFGGNRWPRQETLALLKMRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSAKKCKEKFENLYKYHKRTKDGRTGKSEGKTYRFFEQLEALDHQNHPPPPPPPSRRPPQAPPSQLLAIPATPVSVVATMPLPSTNVNNPPPPPHHHLSTVPSTITPQPCNNVLTPPPINLTSSTINNPPPYNIFPRPPPPPSTSTANPIQSSFPTDLLSNSPSSSTSSDESIERRQRRKRKWKDFFGRLTKKVIEKQEAMQKRLLEAIEKREHERMVREEAWRMQEMARINREREILAQERSVVASKDAAVMALLQKIAEQQNLRLPLNNINISPPPTAPPLTAQPTAQRAPAPAPPAAQPQMMTSVTNMEIVATDNNNSNNGENNLMAPSSSRWPKVEVEALIKLRTSMDEKYQENGPKGPLWEDISAAMRLLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRVKNKLEMINTPPPPSSAAATTVNHSLNPADNDNITTPSSAPPLMVQPEQQWPPQQDTSRENNNNNNAGLEEEEEEEEDDMDEEKDIEDEDDEEEDEEGGGSYEIVASKPASVNAAE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4407g00014 665 SMART sant 80 142 IPR001005 -
Pral4407g00014 665 SMART sant 458 520 IPR001005 -
Pral4407g00014 665 Coils Coil 608 638 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 273 296 - -
Pral4407g00014 665 FunFam Trihelix transcription factor GT-2 462 523 - -
Pral4407g00014 665 ProSiteProfiles Myb-like domain profile. 460 518 IPR001005 -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 169 192 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 206 306 - -
Pral4407g00014 665 Pfam Myb/SANT-like DNA-binding domain 82 168 IPR044822 -
Pral4407g00014 665 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 225 256 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 400 426 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 1 85 - -
Pral4407g00014 665 CDD GT1 460 525 - -
Pral4407g00014 665 CDD GT1 82 147 - -
Pral4407g00014 665 Gene3D - 462 523 - -
Pral4407g00014 665 Gene3D - 84 145 - -
Pral4407g00014 665 FunFam Trihelix transcription factor GT-2 84 145 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 66 81 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 257 272 - -
Pral4407g00014 665 Coils Coil 321 341 - -
Pral4407g00014 665 PANTHER FI21293P1 49 622 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 558 614 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 171 192 - -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 556 665 - -
Pral4407g00014 665 ProSiteProfiles Myb-like domain profile. 82 140 IPR001005 -
Pral4407g00014 665 MobiDBLite consensus disorder prediction 616 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4407g00014 Pral-Chr4407 261348 264969 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4407g00014 80 553 Trihelix Transcription Factor Family AT1G76890 49.197 2.73e-143 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4407g00014 Myb_DNA-bind_4 1e-21 CL0123