Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4406g00030 ATGGGGCACAGTTCCAGGAAGAAGAAGCGTGGAGGAGGTAGTGGAAGGAGAATTAAGGGAAGAACACCCCTGAAAGATCACGTTTCTCAATTTAGTGGGGATGATAATGAACTATCGGAAGAAATAACAGCTCTATGTGCAATTTTCCAAGAAGACTGCAATGTTCTTCCTGGATCACCTCCTCAGATAGTTATTACGCTCAGACCGTATTCAAAGGGCATGGGCTATGAGGATGTAGATGTTTCTGCTGTTCTTGTTGTTAGGTGCTTACCTGGCTATCCTTTCAAGTGTCCAAAGTTGCAAATTACTCCTGAGAATGGTTTATCAGAAAGTGACGCTGATAAACTTATGTCTCTCCTCCATGATCAGGCTAATTTAAATGCCAGGGAGGGAAGAGTAATGATCTTTAATTTGGTAGAGGCTGCTCAAGAGTTTATGTCCAGTATTGAGCCTGCTGGCAAATTAAATGACTCTAAGAATTTGCGCTCAACTATGGAAAGCAATGAAGAATTGTTTCTCAAGGATATAGCAACTTCAAATGGAAGTTCTTTTGTTTATGGTTTCATAGACCTCTTCAATGGCTATGGAGAATCATGGAATTGGGGTTTTGGAATGGATGAAACTTGTGGTAAAATTTCTCCAGTCCCAGCCTCAAAGTTAGATGCCCATGAGCATGTTTATGGGACTGAGGAAAATAAATCTGATATAACTTCAAAACCACCTAAAATACAAGAAACAAAGGAAGGCCTGTTAGTTTCTCCAACTGCCAAATTAGATACCTCGGGGGAAAACAGTGAAGAAAGCAACAAGAGCATGCCTTCATCTAATTCAAGTAGATGTCATGCAGTGGATCTCATAGGGAATGGCAATGAAAATGAGAAAGAGCAAGATTTTATCCTTGATGAGTATACATCAGAGGATAATGAAGAAGGTATTTATGCAACTGCGTTTTCAGAGCCTCAGTCTTCTGCATTCATGGCTCATCATCGAGAACTTCAAACAGATGAAAGGGATCTGATGATGGTCCACTTGCTTCGCCTTGTTTGTTCCTCAAAAAGTCCTTTGGCTAACTCTTTGCCGCAAATAGCTTCAGAGCTGTACAATTTAGGGATCATTTCTGATTGGGCAAAGGATATGGCATCTGAGCCACCTTCTTGTTTTAACAAAACTTTTGATCATGTTTTCCAGAAACACCTGGTATCATCTAAAATATCACAGTTTTGGAAACCTTCTGATCTTGGAGGCCCAACTACGGTTCCCATAAGTTCTCGATATTTGAATGACTTTGAGGAGCTACGGCCTCTTGGTCATGGTGGTTTTGGTCATGTTGTGTTGTGCAGAAACAAACTTGACGGAAGGCAGTATGCAGTAAAGAAAATTCGCCTTAATGACAAAAGCATGCCAGTAAATGACAGGATTTTAAGGGAAGTAGCAACTCTTTCCCGTCTGCAACATCAGCATGTTGTTCGGTATTACCAGGCATGGTTTGAAACTGGTGTTGCTGATTCTTATGCTGATGCTGGTTGGGGTTCAAGAACTCCACTGAGCTCCACCTTCAGCTTTAAAGCTACAAGGTCCCAAGAGACTCTCGGACATGAGAATCAGCTTGAATCAACTTTCCTTTACATTCAAATGGAGTACTGTCCCAGAACCCTCCGCCAGGTATTTGAGTCTTACACTCATTTTGACAAAGAACTGGCATGGCATTTGTTTCGTCAAATAGTAGAAGGCTTGGCGCACATACATGGACAGGGAATAATTCATCGGGATTTGACTCCAAGTAACATATTTTTTGATGCACGGAATGATATCAAAATTGGTGATTTTGGTCTTGCCAAGTTTTTGAAGTTGGAGCAGTTGGATCAAGATCTGGGATATCCAGGTGACACAAATGGAGTTTCCTTTGATGGCACTGGACAAATTGGGACGTATTTCTATACAGCTCCTGAAATTGAGCAAGGGTGGCCTAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGGGTAGTTTTCTTTGAACTTTGGCATCCGTTTGCAACAGCAATGGAGAGACATATTGTATTATCTGATCTGAAGCAGAAAGGAGAACTACCTTCTCCATGGGTTGCTGAGTTTCCAGAACAGGAAGCCTTGCTCCGGCAGCTAATGTCTCCAAGTCCAAGAGATCGTCCTTCTGCCACAGAACTTTTACAGCATGTGTTTCCTCCACGGATGGAGTCTGAGTTATTAGATGATATCCTACAAACTATGCAGACGTCTGAGGATACAAGGATATATGATAAAATTGTAAATGCTATCTTTGATAAAGAGATGTTAAAAGCAAAAGAAAACCTCCAAGGGGCTGATGTCACAAGGGAAGCATTTAGGCAGCATTGTGCAAAGCGGCTGGAAATATTAACAATGCGATTATTTGATGATTTTCCAGAGTATAATAGAAATGCAGTTAAACTTTTGACCAATGGAGGAGACATGCTTGATCTTTGTTACGAGCTACGTTTGCCTTTTGTAAACTGGATTGTATCTAATCAGAAATCTTCTTTCAAACGATATGAGATAACATGTGTCTACCGACGAGCAGTTGGACGTTCATCACCAAACCGGTACCTTCAGGGTGATTTTGACATAATTGGTGGTACATCAGCATTGACAGAGGCAGAGGTCATAAAGGTGACCAGGGATATAGTCACTTGTATTTTTCCTGCAGACGCATGTGACGTTCATCTAAATCATGGTGACCTATTGGATGCAATTTGGTCATGGATCGGTGTTAAGGCTGAGCACAGACTTAAAGTGGCAGAGCTCCTTGCGATGATGGGTTCTCTGCGCCCACAATCGTCAGTAAGAAAATCAAAATGGGCTGTAATACGGAGGCAGCTTTTGCAGGAACTGAATTTAGCAGAAGCTATTGTAAATAGGTTACAAACAGTCGGTTTAAGATTCTGTGGAGCCGCTGATCAGGCCCTTCCTAGACTAAGAGGAGCCCTTCCTCCTGATAAACGCACATGCAAGGCTCTTGAAGAATTGTCTGAGCTCTGCCGTCTTTTGAGAGTTTGGAGGATTGACAGCAATGTTTTTATAGATGCTTTAATGTCCCCAACCGAAAGTTATTACAGAGATTTCTTTTTCCAGGTATACATAACAAAGGGGAATAATCCTGGATCACTCCCAGAAGGTACCTTGCTAGCTGTTGGTGGTTGCTATGACTATGTGCTTCATCAGATGTGGAGCCGTCATTATAAAGCAAATCCTCCCAGTGGCGTAGGAGCCAGCCTTGCGCTAGAGACAATAATTCAGAACTGTCCGATAGATTTTAAGCCCATTAAAAATGAAGCCAGCACCAATATTCTTGTTTGTTCAAGAGGAGGTGGTGGTCTGCTAATAGAGCGCATGGAGCTAGTGGCTGAATTATGGGAGAAAGACTTTAAGGCTGAATTTGTTCCCGTCCCTGATCCGAGTCTCACAGAGCAGTATGAGTACGCCAATGAACATGATATCAAATGTCTTGCTATCATCACTGATCAGACCGATTCTGTAAAGGTTCGCCACCTTGAACTCAAGAAGGAGAAGCAAGTTGAGAGAGAAAATCTAGTCAAGTTTCTATCAAATGCTATGACAACACAATTTCGAAACCCCTTTATTTGGAGCTGA 3648 0.4186 MGHSSRKKKRGGGSGRRIKGRTPLKDHVSQFSGDDNELSEEITALCAIFQEDCNVLPGSPPQIVITLRPYSKGMGYEDVDVSAVLVVRCLPGYPFKCPKLQITPENGLSESDADKLMSLLHDQANLNAREGRVMIFNLVEAAQEFMSSIEPAGKLNDSKNLRSTMESNEELFLKDIATSNGSSFVYGFIDLFNGYGESWNWGFGMDETCGKISPVPASKLDAHEHVYGTEENKSDITSKPPKIQETKEGLLVSPTAKLDTSGENSEESNKSMPSSNSSRCHAVDLIGNGNENEKEQDFILDEYTSEDNEEGIYATAFSEPQSSAFMAHHRELQTDERDLMMVHLLRLVCSSKSPLANSLPQIASELYNLGIISDWAKDMASEPPSCFNKTFDHVFQKHLVSSKISQFWKPSDLGGPTTVPISSRYLNDFEELRPLGHGGFGHVVLCRNKLDGRQYAVKKIRLNDKSMPVNDRILREVATLSRLQHQHVVRYYQAWFETGVADSYADAGWGSRTPLSSTFSFKATRSQETLGHENQLESTFLYIQMEYCPRTLRQVFESYTHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGYPGDTNGVSFDGTGQIGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFATAMERHIVLSDLKQKGELPSPWVAEFPEQEALLRQLMSPSPRDRPSATELLQHVFPPRMESELLDDILQTMQTSEDTRIYDKIVNAIFDKEMLKAKENLQGADVTREAFRQHCAKRLEILTMRLFDDFPEYNRNAVKLLTNGGDMLDLCYELRLPFVNWIVSNQKSSFKRYEITCVYRRAVGRSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCIFPADACDVHLNHGDLLDAIWSWIGVKAEHRLKVAELLAMMGSLRPQSSVRKSKWAVIRRQLLQELNLAEAIVNRLQTVGLRFCGAADQALPRLRGALPPDKRTCKALEELSELCRLLRVWRIDSNVFIDALMSPTESYYRDFFFQVYITKGNNPGSLPEGTLLAVGGCYDYVLHQMWSRHYKANPPSGVGASLALETIIQNCPIDFKPIKNEASTNILVCSRGGGGLLIERMELVAELWEKDFKAEFVPVPDPSLTEQYEYANEHDIKCLAIITDQTDSVKVRHLELKKEKQVERENLVKFLSNAMTTQFRNPFIWS 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4406g00030 1215 MobiDBLite consensus disorder prediction 228 280 - -
Pral4406g00030 1215 ProSitePatterns Protein kinases ATP-binding region signature. 435 459 IPR017441 GO:0005524
Pral4406g00030 1215 FunFam eIF-2-alpha kinase GCN2 29 155 - -
Pral4406g00030 1215 SUPERFAMILY Class II aaRS ABD-related 1114 1205 - -
Pral4406g00030 1215 FunFam eIF-2-alpha kinase GCN2 770 1103 - -
Pral4406g00030 1215 SUPERFAMILY UBC-like 36 146 IPR016135 -
Pral4406g00030 1215 MobiDBLite consensus disorder prediction 1 33 - -
Pral4406g00030 1215 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Pral4406g00030 1215 Pfam Protein kinase domain 429 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4406g00030 1215 SUPERFAMILY Protein kinase-like (PK-like) 425 743 IPR011009 -
Pral4406g00030 1215 Gene3D - 1110 1206 IPR036621 -
Pral4406g00030 1215 Gene3D Transferase(Phosphotransferase) domain 1 550 742 - -
Pral4406g00030 1215 ProSitePatterns Tyrosine protein kinases specific active-site signature. 586 598 IPR008266 GO:0004672|GO:0006468
Pral4406g00030 1215 Gene3D Phosphorylase Kinase; domain 1 417 547 - -
Pral4406g00030 1215 SUPERFAMILY Class II aaRS and biotin synthetases 784 1098 IPR045864 -
Pral4406g00030 1215 Gene3D Ubiquitin Conjugating Enzyme 30 156 IPR016135 -
Pral4406g00030 1215 MobiDBLite consensus disorder prediction 1 16 - -
Pral4406g00030 1215 FunFam Histidine--tRNA ligase, cytoplasmic 1110 1205 - -
Pral4406g00030 1215 Gene3D Bira Bifunctional Protein; Domain 2 763 1102 IPR045864 -
Pral4406g00030 1215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 62 778 - -
Pral4406g00030 1215 MobiDBLite consensus disorder prediction 257 280 - -
Pral4406g00030 1215 Pfam RWD domain 37 145 IPR006575 GO:0005515
Pral4406g00030 1215 FunFam eIF-2-alpha kinase GCN2 417 547 - -
Pral4406g00030 1215 SMART RWD2001b 40 149 IPR006575 GO:0005515
Pral4406g00030 1215 Pfam Anticodon binding domain of tRNAs 1114 1207 IPR024435 -
Pral4406g00030 1215 MobiDBLite consensus disorder prediction 19 33 - -
Pral4406g00030 1215 Coils Coil 956 976 - -
Pral4406g00030 1215 ProSiteProfiles Protein kinase domain profile. 429 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4406g00030 1215 Pfam Histidyl-tRNA synthetase 853 1096 IPR041715 -
Pral4406g00030 1215 CDD STKc_EIF2AK4_GCN2_rpt2 422 732 - -
Pral4406g00030 1215 MobiDBLite consensus disorder prediction 228 242 - -
Pral4406g00030 1215 FunFam eIF-2-alpha kinase GCN2 551 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4406g00030 Pral-Chr4406 138235 163520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4406g00030 429 734 MAP Kinase Kinase Kinase AT1G63700 25.321 4.71e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Pral4406g00030 Pkinase 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4406g00030 K16196 - gmx:100797996 1840.85