Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4406g00028 ATGGGGCACAGTTCCAGGAAGAAGAAGCGTGGAGGAGGTAGTGGAAGGAGAATTAAGGGAAGAACACCCCTGAAAGATCACGTTTCTCAATTTAGTGGGGATGATAATGAACTATCGGAAGAAATAACAGCTCTATGTGCAATTTTCCAAGAAGACTGCAATGTTCTTCCTGGATCACCTCCTCAGATAGTTATTACGCTCAGACCGTATTCAAAGGGCATGGGCTATGAGGATGTAGATGTTTCTGCTGTTCTTGTTGTTAGGTGCTTACCTGGCTATCCTTTCAAGTGTCCAAAGTTGCAAATTACTCCTGAGAATGGTTTATCAGAAAGTGACGCTGATAAACTTATGTCTCTCCTCCATGATCAGGCTAATTTAAATGCCAGGGAGGGAAGAGTAATGATCTTTAATTTGGTAGAGGCTGCTCAAGAGTTTATGTCCAGTATTGAGCCTGCTGGCAAATTAAATGACTCTAATTTGCGCTCAACTATGGAAAGCAATGAAGAATTGTTTCTCAAGGATATAGCAACTTCAAATGGAAGTTCTTTTGTTTATGGTTTCATAGACCTCTTCAATGGCTATGGAGAATCATGGAATTGGGGTTTTGGAATGGATGAAACTTGTGGTAAAATTTCTCCAGTCCCAGCCTCAAAGTTAGATGCCCATGAGCATGTTTATGGGACTGAGGAAAATAAATCTGATATAACTTCAAAACCACCTAAAATACAAGAAACAAAGGAAGGCCTGTTAGTTTCTCCAACTGCCAAATTAGATACCTCGGGGGAAAACAGTGAAGAAAGCAACAAGAGCATGCCTTCATCTAATTCAAGTAGATGTCATGCAGTGGATCTCATAGGGAATGGCAATGAAAATGAGAAAGAGCAAGATTTTATCCTTGATGAGTATACATCAGAGGATAATGAAGAAGGTATTTATGCAACTGCGTTTTCAGAGCCTCAGTCTTCTGCATTCATGGCTCATCATCGAGAACTTCAAACAGATGAAAGGGATCTGATGATGGTCCACTTGCTTCGCCTTGTTTGTTCCTCAAAAAGTCCTTTGGCTAACTCTTTGCCGCAAATAGCTTCAGAGCTGTACAATTTAGGGATCATTTCTGATTGGGCAAAGGATATGGCATCTGAGCCACCTTCTTGTTTTAACAAAACTTTTGATCATGTTTTCCAGAAACACCTGGTATCATCTAAAATATCACAGTTTTGGAAACCTTCTGATCTTGGAGGCCCAACTACGGTTCCCATAAGTTCTCGATATTTGAATGACTTTGAGGAGCTACGGCCTCTTGGTCATGGTGGTTTTGGTCATGTTGTGTTGTGCAGAAACAAACTTGACGGAAGGCAGTATGCAGTAAAGAAAATTCGCCTTAATGACAAAAGCATGCCAGTAAATGACAGGATTTTAAGGGAAGTAGCAACTCTTTCCCGTCTGCAACATCAGCATGTTGTTCGGTATTACCAGGCATGGTTTGAAACTGGTGTTGCTGATTCTTATGCTGATGCTGGTTGGGGTTCAAGAACTCCACTGAGCTCCACCTTCAGCTTTAAAGCTACAAGGTCCCAAGAGACTCTCGGACATGAGAATCAGCTTGAATCAACTTTCCTTTACATTCAAATGGAGTACTGTCCCAGAACCCTCCGCCAGGTATTTGAGTCTTACACTCATTTTGACAAAGAACTGGCATGGCATTTGTTTCGTCAAATAGTAGAAGGCTTGGCGCACATACATGGACAGGGAATAATTCATCGGGATTTGACTCCAAGTAACATATTTTTTGATGCACGGAATGATATCAAAATTGGTGATTTTGGTCTTGCCAAGTTTTTGAAGTTGGAGCAGTTGGATCAAGATCTGGGATATCCAGGTGACACAAATGGAGTTTCCTTTGATGGCACTGGACAAATTGGGACGTATTTCTATACAGCTCCTGAAATTGAGCAAGGGTGGCCTAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGGGTAGTTTTCTTTGAACTTTGGCATCCGTTTGCAACAGCAATGGAGAGACATATTGTATTATCTGATCTGAAGCAGAAAGGAGAACTACCTTCTCCATGGGTTGCTGAGTTTCCAGAACAGGAAGCCTTGCTCCGGCAGCTAATGTCTCCAAGTCCAAGAGATCGTCCTTCTGCCACAGAACTTTTACAGCATGTGTTTCCTCCACGGATGGAGTCTGAGTTATTAGATGATATCCTACAAACTATGCAGACGTCTGAGGATACAAGGATATATGATAAAATTGTAAATGCTATCTTTGATAAAGAGATGTTAAAAGCAAAAGAAAACCTCCAAGGGGCTGGTAGATTTGGGTCAGTTGGAGATAATAATTCGTCCGTTCAATACACAGATTTAGAAACTGAGGTTCGTGATTATGTTGTAGATGTCACAAGGGAAGCATTTAGGCAGCATTGTGCAAAGCGGCTGGAAATATTAACAATGCGATTATTTGATGATTTTCCAGAGTATAATAGAAATGCAGTTAAACTTTTGACCAATGGAGGAGACATGCTTGATCTTTGTTACGAGCTACGTTTGCCTTTTGTAAACTGGATTGTATCTAATCAGAAATCTTCTTTCAAACGATATGAGATAACATGTGTCTACCGACGAGCAGTTGGACGTTCATCACCAAACCGGTACCTTCAGGGTGATTTTGACATAATTGGTGGTACATCAGCATTGACAGAGGCAGAGGTCATAAAGGTGACCAGGGATATAGTCACTTGTATTTTTCCTGCAGACGCATGTGACGTTCATCTAAATCATGGTGACCTATTGGATGCAATTTGGTCATGGATCGGTGTTAAGGCTGAGCACAGACTTAAAGTGGCAGAGCTCCTTGCGATGATGGGTTCTCTGCGCCCACAATCGTCAGTAAGAAAATCAAAATGGGCTGTAATACGGAGGCAGCTTTTGCAGGAACTGAATTTAGCAGAAGCTATTGTAAATAGGTTACAAACAGTCGGTTTAAGATTCTGTGGAGCCGCTGATCAGGCCCTTCCTAGACTAAGAGGAGCCCTTCCTCCTGATAAACGCACATGCAAGGCTCTTGAAGAATTGTCTGAGCTCTGCCGTCTTTTGAGAGTTTGGAGGATTGACAGCAATGTTTTTATAGATGCTTTAATGTCCCCAACCGAAAGTTATTACAGAGATTTCTTTTTCCAGGTATACATAACAAAGGGGAATAATCCTGGATCACTCCCAGAAGGTACCTTGCTAGCTGTTGGTGGTTGCTATGACTATGTGCTTCATCAGATGTGGAGCCGTCATTATAAAGCAAATCCTCCCAGTGGCGTAGGAGCCAGCCTTGCGCTAGAGACAATAATTCAGAACTGTCCGATAGATTTTAAGCCCATTAAAAATGAAGCCAGCACCAATATTCTTGTTTGTTCAAGAGGAGGTGGTGGTCTGCTAATAGAGCGCATGGAGCTAGTGGCTGAATTATGGGAGAAAGACTTTAAGGCTGAATTTGTTCCCGTCCCTGATCCGAGTCTCACAGAGCAGTATGAGTACGCCAATGAACATGATATCAAATGTCTTGCTATCATCACTGATCAGACCGATTCTGTAAAGGTTCGCCACCTTGAACTCAAGAAGGAGAAGCAAGTTGAGAGAGAAAATCTAGTCAAGTTTCTATCAAATGCTATGACAACACAATTTCGAAACCCCTTTATTTGGAGCTGA 3726 0.4176 MGHSSRKKKRGGGSGRRIKGRTPLKDHVSQFSGDDNELSEEITALCAIFQEDCNVLPGSPPQIVITLRPYSKGMGYEDVDVSAVLVVRCLPGYPFKCPKLQITPENGLSESDADKLMSLLHDQANLNAREGRVMIFNLVEAAQEFMSSIEPAGKLNDSNLRSTMESNEELFLKDIATSNGSSFVYGFIDLFNGYGESWNWGFGMDETCGKISPVPASKLDAHEHVYGTEENKSDITSKPPKIQETKEGLLVSPTAKLDTSGENSEESNKSMPSSNSSRCHAVDLIGNGNENEKEQDFILDEYTSEDNEEGIYATAFSEPQSSAFMAHHRELQTDERDLMMVHLLRLVCSSKSPLANSLPQIASELYNLGIISDWAKDMASEPPSCFNKTFDHVFQKHLVSSKISQFWKPSDLGGPTTVPISSRYLNDFEELRPLGHGGFGHVVLCRNKLDGRQYAVKKIRLNDKSMPVNDRILREVATLSRLQHQHVVRYYQAWFETGVADSYADAGWGSRTPLSSTFSFKATRSQETLGHENQLESTFLYIQMEYCPRTLRQVFESYTHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGYPGDTNGVSFDGTGQIGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFATAMERHIVLSDLKQKGELPSPWVAEFPEQEALLRQLMSPSPRDRPSATELLQHVFPPRMESELLDDILQTMQTSEDTRIYDKIVNAIFDKEMLKAKENLQGAGRFGSVGDNNSSVQYTDLETEVRDYVVDVTREAFRQHCAKRLEILTMRLFDDFPEYNRNAVKLLTNGGDMLDLCYELRLPFVNWIVSNQKSSFKRYEITCVYRRAVGRSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCIFPADACDVHLNHGDLLDAIWSWIGVKAEHRLKVAELLAMMGSLRPQSSVRKSKWAVIRRQLLQELNLAEAIVNRLQTVGLRFCGAADQALPRLRGALPPDKRTCKALEELSELCRLLRVWRIDSNVFIDALMSPTESYYRDFFFQVYITKGNNPGSLPEGTLLAVGGCYDYVLHQMWSRHYKANPPSGVGASLALETIIQNCPIDFKPIKNEASTNILVCSRGGGGLLIERMELVAELWEKDFKAEFVPVPDPSLTEQYEYANEHDIKCLAIITDQTDSVKVRHLELKKEKQVERENLVKFLSNAMTTQFRNPFIWS 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4406g00028 1241 Gene3D - 1136 1232 IPR036621 -
Pral4406g00028 1241 Pfam RWD domain 37 145 IPR006575 GO:0005515
Pral4406g00028 1241 CDD STKc_EIF2AK4_GCN2_rpt2 421 731 - -
Pral4406g00028 1241 Pfam Histidyl-tRNA synthetase 879 1122 IPR041715 -
Pral4406g00028 1241 SUPERFAMILY UBC-like 36 146 IPR016135 -
Pral4406g00028 1241 MobiDBLite consensus disorder prediction 252 278 - -
Pral4406g00028 1241 MobiDBLite consensus disorder prediction 1 33 - -
Pral4406g00028 1241 FunFam eIF-2-alpha kinase GCN2 416 546 - -
Pral4406g00028 1241 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Pral4406g00028 1241 FunFam Histidine--tRNA ligase, cytoplasmic 1136 1231 - -
Pral4406g00028 1241 ProSiteProfiles Protein kinase domain profile. 428 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4406g00028 1241 FunFam eIF-2-alpha kinase GCN2 550 743 - -
Pral4406g00028 1241 Pfam Protein kinase domain 428 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4406g00028 1241 MobiDBLite consensus disorder prediction 1 16 - -
Pral4406g00028 1241 Gene3D Bira Bifunctional Protein; Domain 2 793 1128 IPR045864 -
Pral4406g00028 1241 FunFam eIF-2-alpha kinase GCN2 29 155 - -
Pral4406g00028 1241 ProSitePatterns Tyrosine protein kinases specific active-site signature. 585 597 IPR008266 GO:0004672|GO:0006468
Pral4406g00028 1241 Coils Coil 982 1002 - -
Pral4406g00028 1241 SMART RWD2001b 40 149 IPR006575 GO:0005515
Pral4406g00028 1241 SUPERFAMILY Protein kinase-like (PK-like) 424 742 IPR011009 -
Pral4406g00028 1241 Pfam Anticodon binding domain of tRNAs 1140 1233 IPR024435 -
Pral4406g00028 1241 MobiDBLite consensus disorder prediction 19 33 - -
Pral4406g00028 1241 ProSitePatterns Protein kinases ATP-binding region signature. 434 458 IPR017441 GO:0005524
Pral4406g00028 1241 Gene3D Transferase(Phosphotransferase) domain 1 549 741 - -
Pral4406g00028 1241 MobiDBLite consensus disorder prediction 227 246 - -
Pral4406g00028 1241 MobiDBLite consensus disorder prediction 227 241 - -
Pral4406g00028 1241 SUPERFAMILY Class II aaRS ABD-related 1140 1231 - -
Pral4406g00028 1241 Gene3D Phosphorylase Kinase; domain 1 416 546 - -
Pral4406g00028 1241 PANTHER HISTIDYL-TRNA SYNTHETASE 771 1235 - -
Pral4406g00028 1241 SUPERFAMILY Class II aaRS and biotin synthetases 794 1124 IPR045864 -
Pral4406g00028 1241 Gene3D Ubiquitin Conjugating Enzyme 30 155 IPR016135 -
Pral4406g00028 1241 MobiDBLite consensus disorder prediction 256 278 - -
Pral4406g00028 1241 FunFam eIF-2-alpha kinase GCN2 793 1129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4406g00028 Pral-Chr4406 138235 163520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4406g00028 428 733 MAP Kinase Kinase Kinase AT1G63700 25.321 5.82e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Pral4406g00028 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4406g00028 K16196 - gmx:100797996 1871.29