Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4406g00022 ATGCCTCTCCCGCCTAAATCGATCAAGGCTGCTCAGGAAGGCGGTGGCATGGTCAAGGATTTCGAAGATCCCGAGACCCCTTCCAACAATCTATGGGTTGGCAATTTATCGCACGAGGTTACAGAGTCCGATCTTATGGCTCTCTTCGCTCAATACGGCGCACTTGATAGCGTCACGTCGTATTCCTCTCGGAGTTACGGCTTCGTGTTTTTCAAGCGCATTGATGATGCCAAGGCTGCCAAGAACGCGTTACAAGGCACTCTTCTGCGCGGAATTCCCATGAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACAACTTTGGGTGGGTGGTATTAGCCTATCTGTTACAAAGGAAGAGCTGGAGGCTGAGTTTCGCAAATTTGGTAAGATTGAGGATTTTAAGTTCGTCAGAGACCGCAACACTGCATTTGTTGAATATTACAATTTAGATGATGCAACTCATGCCATGAAAATGATGAATGGAAAGCGTATTGGTGGCGATCAAATTCGCGTAGATTTCCTTCGATCACAATCATCAAAAAAGGATATGTTGCTCGAGTATGGGCAGCTTCAGGGAAAAACCGTGGGCCCTCCTGATTTCTACTCTGGCCAGAAAAGACCACTGCAAACACAGCCTTCAATTGGGAGGAAGGGAGATAGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAGATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTGGAATTCAGGAGTGTGGATGAAGCTCGACGTGCTAAAGAGGGTCTTCAAGGCCGGCTTTTTAATGATCCTCGGATTACTATTATGTATTCAAGCAGTGAGCTGGCACCTGGCAAAGATTACCCTGGCGTTTTCCCTGTAAGCAAAGGACCAAAACCTGACATGTTCTTAACTGAGCAAACATTTCGACCATTGCAGGTGGATGTGTTTGGACATAGTCGTCCAATGGTTCCAAATAATCTTTCCAGCCAGTTAGCACCTGGTGTTATTGTTGGACCAAATGTACCGTTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAACCTTCGCTTTCAGGCATTGAATCTAATGAACTGGGCACAAACCAAAAGTTTCAGGATGGTAGCTCCAAAAGTCAAATGGGTCCAAATTGGAAACGGCTATCTCCTCCAGCACCAGGGATGCTCCATCCGGCACCGGGTATTAGACCTCCAACTAGATCCACATCTAGCGCATGGGATGTGTTTGACATAAACCAGTTTCAGAGGGATTCAAAGCGTTCAAGGATAGATGGTGCTTTACCTGTTGATGATGTTCCCTTTCCGTTAAGAAATGCTGATGACCGTGCAGTAGGGCTAGAGCAATCTTATGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTCCATTTGTAAACATGCAAGGGAAGGCTCCCCCTGGTCCAGTGGGCACAAGGATCTCAACTGGAGTGCCTGCTACTGTTCAAGTCGATATTGATCACATATGGCGTGGGATAATTGCAAAAGGGGGAACGCCAGTTTGTCAAGCAAGATGTGTTCCTATAGGAAAAGGGATAGGGACTGAGCTGCCGGAAGTTGTTGATTGCTCAGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTGTCGGTTTTGACATTGTCTTCTTCCTGCCTGATAGTGAAGATGACTTTGCATCATACACTGAATTTCTTCGCTACCTTGGTGCTAAAAACCGTGCTGGTGTTGCCAAATTTGTTGATGGTACCACTCTATTCTTGGTGCCTCCATCTGATTTCTTAACAAAGGTTTTAAAAGTCGCAGGGCCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCATCTATGCCAAGTGGCACATCATTGCAACAGCCACTGCCTTTGTCTATACCTTCCAGTCGGTATATTGATAGGCAGCAGATTTCTCCTTCTCAAGTAGAGTATAGTCAGATCCCTGCAAAGGAGGAAGAAATTTTGCCTATGGATTATAATAGGTTGTTGCATGATGAGTCTAAAGTTCCTTCAAAACCACTTTATCCAGCTACAAGTGGCGCCTCTTTAGTTCAGTCTGTACCCTCAGACTATACTTCTAGCAATACTGCTGCAGGAACCCAACCTGGCGTTACATTAACACCTGAGCTTATTGCCACTCTAGCCTCCTTGCTTCCTGGAACTACACCATCATCTACTGCTGATGGGGCCAAGCCAGCAGTTGGCTCCTCAACTATGAAAGCTCCATTTCCTCCATTTGCTCCCACTGACGGAAACCAATCTCATGTATGGAAACAGGACCATCTAATTGCAGATCCGTCCAGTCATGTCCTTCAACAGGCAGGGAGTACGTACTATCAGCCTTATCCACTATCATCTACTTATGGCCACCCTGGTCAAGTGGTCCCTGGCAGTACAAATATCCAAGATTCTGCAGCCAGCTTACAGCAGCAGGTTGCCATCTCATCTAGACCCATGACTAACTTGATGCCTTCTCAAAGCGGACAAGTAACGTTATCCCTCCCAGTGAATCAACCATATCAGGTTGAAGTGTCCTCCAGCTCTCAGAAAGGCTATGGAGTGGTGCAGGGAATAGATGCCTCTGTTTTATATAGTTCTCAGGCTATTCAGAATCCTAATATTTCTGTTTCCTCATCTAATCAAGTTCATGGTGCTAACCCTTCTCAGCAACAAACTGCTATGCCATATTCAGCAGAAAAAGTGAACGCAGAGCCTCCAAATCAGCAGTTTCAACCTGCTCTCCAAGCAGTTAGTCAGGGTGCGTCATCAGAAGTGGAGGCAGATAAAAACCAGAGGTACCAGTCAACACTACAGTTTGCTGCCAGTCTTCTCCTCCAAATACAGCAGCAGCAGCAAACCCAAGGAGGACGGGGGGCTGGAAATCAACAGTGA 2985 0.46 MPLPPKSIKAAQEGGGMVKDFEDPETPSNNLWVGNLSHEVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRIDDAKAAKNALQGTLLRGIPMKIEFARPAKPCKQLWVGGISLSVTKEELEAEFRKFGKIEDFKFVRDRNTAFVEYYNLDDATHAMKMMNGKRIGGDQIRVDFLRSQSSKKDMLLEYGQLQGKTVGPPDFYSGQKRPLQTQPSIGRKGDSQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGVFPVSKGPKPDMFLTEQTFRPLQVDVFGHSRPMVPNNLSSQLAPGVIVGPNVPLRPFGPQGSLEPSLSGIESNELGTNQKFQDGSSKSQMGPNWKRLSPPAPGMLHPAPGIRPPTRSTSSAWDVFDINQFQRDSKRSRIDGALPVDDVPFPLRNADDRAVGLEQSYGMEPVIDGGSGPFVNMQGKAPPGPVGTRISTGVPATVQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAVGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSLQQPLPLSIPSSRYIDRQQISPSQVEYSQIPAKEEEILPMDYNRLLHDESKVPSKPLYPATSGASLVQSVPSDYTSSNTAAGTQPGVTLTPELIATLASLLPGTTPSSTADGAKPAVGSSTMKAPFPPFAPTDGNQSHVWKQDHLIADPSSHVLQQAGSTYYQPYPLSSTYGHPGQVVPGSTNIQDSAASLQQQVAISSRPMTNLMPSQSGQVTLSLPVNQPYQVEVSSSSQKGYGVVQGIDASVLYSSQAIQNPNISVSSSNQVHGANPSQQQTAMPYSAEKVNAEPPNQQFQPALQAVSQGASSEVEADKNQRYQSTLQFAASLLLQIQQQQQTQGGRGAGNQQ 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4406g00022 994 Gene3D - 216 303 IPR012677 -
Pral4406g00022 994 FunFam flowering time control protein FPA 219 313 - -
Pral4406g00022 994 MobiDBLite consensus disorder prediction 206 222 - -
Pral4406g00022 994 SMART rrm1_1 107 174 IPR000504 GO:0003723
Pral4406g00022 994 SMART rrm1_1 30 97 IPR000504 GO:0003723
Pral4406g00022 994 SMART rrm1_1 227 295 IPR000504 GO:0003723
Pral4406g00022 994 MobiDBLite consensus disorder prediction 942 961 - -
Pral4406g00022 994 Pfam SPOC domain 516 631 IPR012921 -
Pral4406g00022 994 CDD SPOC_FPA-like 519 639 - -
Pral4406g00022 994 CDD RRM_SF 108 174 - -
Pral4406g00022 994 MobiDBLite consensus disorder prediction 198 222 - -
Pral4406g00022 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Pral4406g00022 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Pral4406g00022 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Pral4406g00022 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Pral4406g00022 994 FunFam Flowering time control protein FPA 21 103 - -
Pral4406g00022 994 MobiDBLite consensus disorder prediction 1 26 - -
Pral4406g00022 994 Gene3D - 105 208 IPR012677 -
Pral4406g00022 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Pral4406g00022 994 MobiDBLite consensus disorder prediction 751 772 - -
Pral4406g00022 994 CDD RRM_SF 31 97 - -
Pral4406g00022 994 SUPERFAMILY RNA-binding domain, RBD 211 299 IPR035979 GO:0003676
Pral4406g00022 994 SUPERFAMILY RNA-binding domain, RBD 26 181 IPR035979 GO:0003676
Pral4406g00022 994 Gene3D - 6 104 IPR012677 -
Pral4406g00022 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
Pral4406g00022 994 PANTHER RNA RECOGNITION MOTIF-CONTAINING 19 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4406g00022 Pral-Chr4406 103960 116080 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4406g00022 28 289 Eukaryotic Initiation Factors Gene Family AT1G49760 27.622 5.22e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4406g00022 - - gmx:100777570 1371.3