Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4405g00008 ATGGAGTCAGATCTCCAGCCGCATCCTCCCATGTTTCGCGATCAGCAGCAGATTAATTCGGGGCTGACACGTTACCGATCGGCGCCCACTTCCTATTTTACCGATATAATTGACAAGGAGTGTTTTGAGCACATATTCAATCGACCATCTAGCCCCGAAACCGAGAGAGTTTTTTCGCGCCTTATCAGTAGTTTTTCTGAGGATCCCCCTGCTCAAAATCTCGCGCCCCTCACTGTAAAGCAAGAGGACGATCAGAACCAGCTACCTCAGGCTCAGGCTCAGGCCATGCCATCCATCAACAATGAACCGACGGTTTTGCGGCGGCAGCAGAGCAACATGAATATTTACGATAGTGCTCCTCGTAATCCATACACAAGATCAGCGCGGCCCCCTCTGCCGAATCAGAGCCTCCCCTCAGCTCATCGGTTGCCCCCTATGAAGACGAGACTTGGAAATAGTACTAGTAATCTAACCCGGCATAATAGCTCCCCTCCGGGACTCTTAGCTAACTTCAACATTGGTCCTGGCTATGCTGCGGCTGTGAGAGGCATGGAAACTTTTGTGGCTGCAGATAACGCTACTGAAGCGACAAGCTTTCCTTCTGCAGGAACGTTGAAGAACCGACCGCCTTACTCGTCAGGGTTAATGTCATCCATAGCTGAAATCGGAGATAAAAACTACACAGAATTAGATAATCCCCGGAAGGAGGCCTTTACTGAAAGCCAGGGCGGTGATTTTATGTCGGGTTTCCTTGAAGATCCTTGGGACGCTTCTGCGATCATGTCTGACAATATTAGTGGTCATAAAAGATACAGAGATGATGAGAATGACGCAAAACCATTTTCTGGTTTAAGTGCGGCTGAAGCCAAGAATGAGAGGGGAAGCCAGGGCACCTGTCCTCCTCCATTGACTCATCACTTGAGTTTGCCAAAAACTGCAATGGAGATGGCAGCCGTTGAGAAGCTATTGCAGTATTCAGACACTGTTCCCTGTAAAATTCGTGCTAAGCGAGGCTGTGCCACTCACCCCCGAAGCATTGCAGAGCGGGTTAGAAGAACTAAAATTAGTGAGCGCATGAGGAAACTACAAGATCTGGTTCCCAACATGGACAAGCAAACAAACACGGCGGACATGTTGGACTTGGCTGTCGACCACATTAAAGACCTTCAAAAGCAGATTCAGAAACTTTTAGACAGCCGATCTGGATGTACGTGTTTGCAGAGGCAGCACCAATAA 1236 0.4871 MESDLQPHPPMFRDQQQINSGLTRYRSAPTSYFTDIIDKECFEHIFNRPSSPETERVFSRLISSFSEDPPAQNLAPLTVKQEDDQNQLPQAQAQAMPSINNEPTVLRRQQSNMNIYDSAPRNPYTRSARPPLPNQSLPSAHRLPPMKTRLGNSTSNLTRHNSSPPGLLANFNIGPGYAAAVRGMETFVAADNATEATSFPSAGTLKNRPPYSSGLMSSIAEIGDKNYTELDNPRKEAFTESQGGDFMSGFLEDPWDASAIMSDNISGHKRYRDDENDAKPFSGLSAAEAKNERGSQGTCPPPLTHHLSLPKTAMEMAAVEKLLQYSDTVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDHIKDLQKQIQKLLDSRSGCTCLQRQHQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4405g00008 411 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 137 406 - -
Pral4405g00008 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 402 IPR036638 GO:0046983
Pral4405g00008 411 Coils Coil 379 399 - -
Pral4405g00008 411 SMART finulus 345 395 IPR011598 GO:0046983
Pral4405g00008 411 MobiDBLite consensus disorder prediction 115 144 - -
Pral4405g00008 411 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
Pral4405g00008 411 Gene3D - 340 409 IPR036638 GO:0046983
Pral4405g00008 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Pral4405g00008 411 FunFam Transcription factor bHLH130 family 340 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4405g00008 Pral-Chr4405 43296 45763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4405g00008 1 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.283 6.33e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4405g00008 HLH 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4405g00008 - - pcin:129315911 568.54