LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4405g00008	ATGGAGTCAGATCTCCAGCCGCATCCTCCCATGTTTCGCGATCAGCAGCAGATTAATTCGGGGCTGACACGTTACCGATCGGCGCCCACTTCCTATTTTACCGATATAATTGACAAGGAGTGTTTTGAGCACATATTCAATCGACCATCTAGCCCCGAAACCGAGAGAGTTTTTTCGCGCCTTATCAGTAGTTTTTCTGAGGATCCCCCTGCTCAAAATCTCGCGCCCCTCACTGTAAAGCAAGAGGACGATCAGAACCAGCTACCTCAGGCTCAGGCTCAGGCCATGCCATCCATCAACAATGAACCGACGGTTTTGCGGCGGCAGCAGAGCAACATGAATATTTACGATAGTGCTCCTCGTAATCCATACACAAGATCAGCGCGGCCCCCTCTGCCGAATCAGAGCCTCCCCTCAGCTCATCGGTTGCCCCCTATGAAGACGAGACTTGGAAATAGTACTAGTAATCTAACCCGGCATAATAGCTCCCCTCCGGGACTCTTAGCTAACTTCAACATTGGTCCTGGCTATGCTGCGGCTGTGAGAGGCATGGAAACTTTTGTGGCTGCAGATAACGCTACTGAAGCGACAAGCTTTCCTTCTGCAGGAACGTTGAAGAACCGACCGCCTTACTCGTCAGGGTTAATGTCATCCATAGCTGAAATCGGAGATAAAAACTACACAGAATTAGATAATCCCCGGAAGGAGGCCTTTACTGAAAGCCAGGGCGGTGATTTTATGTCGGGTTTCCTTGAAGATCCTTGGGACGCTTCTGCGATCATGTCTGACAATATTAGTGGTCATAAAAGATACAGAGATGATGAGAATGACGCAAAACCATTTTCTGGTTTAAGTGCGGCTGAAGCCAAGAATGAGAGGGGAAGCCAGGGCACCTGTCCTCCTCCATTGACTCATCACTTGAGTTTGCCAAAAACTGCAATGGAGATGGCAGCCGTTGAGAAGCTATTGCAGTATTCAGACACTGTTCCCTGTAAAATTCGTGCTAAGCGAGGCTGTGCCACTCACCCCCGAAGCATTGCAGAGCGGGTTAGAAGAACTAAAATTAGTGAGCGCATGAGGAAACTACAAGATCTGGTTCCCAACATGGACAAGCAAACAAACACGGCGGACATGTTGGACTTGGCTGTCGACCACATTAAAGACCTTCAAAAGCAGATTCAGAAACTTTTAGACAGCCGATCTGGATGTACGTGTTTGCAGAGGCAGCACCAATAA	1236	0.4871	MESDLQPHPPMFRDQQQINSGLTRYRSAPTSYFTDIIDKECFEHIFNRPSSPETERVFSRLISSFSEDPPAQNLAPLTVKQEDDQNQLPQAQAQAMPSINNEPTVLRRQQSNMNIYDSAPRNPYTRSARPPLPNQSLPSAHRLPPMKTRLGNSTSNLTRHNSSPPGLLANFNIGPGYAAAVRGMETFVAADNATEATSFPSAGTLKNRPPYSSGLMSSIAEIGDKNYTELDNPRKEAFTESQGGDFMSGFLEDPWDASAIMSDNISGHKRYRDDENDAKPFSGLSAAEAKNERGSQGTCPPPLTHHLSLPKTAMEMAAVEKLLQYSDTVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDHIKDLQKQIQKLLDSRSGCTCLQRQHQ	411

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pral4405g00008	411	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	137	406	-	-
Pral4405g00008	411	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	342	402	IPR036638	GO:0046983
Pral4405g00008	411	Coils	Coil	379	399	-	-
Pral4405g00008	411	SMART	finulus	345	395	IPR011598	GO:0046983
Pral4405g00008	411	MobiDBLite	consensus disorder prediction	115	144	-	-
Pral4405g00008	411	Pfam	Helix-loop-helix DNA-binding domain	344	390	IPR011598	GO:0046983
Pral4405g00008	411	Gene3D	-	340	409	IPR036638	GO:0046983
Pral4405g00008	411	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	339	389	IPR011598	GO:0046983
Pral4405g00008	411	FunFam	Transcription factor bHLH130 family	340	409	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4405g00008	Pral-Chr4405	43296	45763	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4405g00008	1	405	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G51140	38.283	6.33e-72	229

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Pral4405g00008		HLH	2.6e-09	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4405g00008	-		-	pcin:129315911	568.54

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