Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4405g00002 ATGACCGACCCCTACTGCCCCGAAGCCTTCAATTCTCCCTTCCTTTTCTCCTCCTCCTTTAACTTTCCTTGTGCTCATTTTAACTCGTCATCTCTCGCTTTACCCTCTTCTCCTCCTCCGAGAGAAGCCCTACCTCTCCTTAACCTAAGCCCTCCAAGACATGACGAAGATGATATGCAAGTAGACATCAAGCAGAAAGAAGGAGGCACGGGGTGTGGTTCTTTGAATGATGATCCTGTGACGTTGGCTTTGCAGTTACACCTCGGCCTTCCAACCCCAAGCAGTTCATCGCCTGACTTGGCTGATTCGAACCTATGCTCCTCAGAGACAGTTTCAGACAAAGACGAAGTCACAACTGTATCTTCTGGGTATCTCTCTGATAGGATCACTCCAGGCGGTCAGTATTGGATCCCTACCCCAGCTCAGATTCTGATTGGTCCCACACAGTTCTCCTGCCCTCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTGAATACAGAAGGGGACCAGAGTCTCTAAGGGGGACACAGCCAACAGCAATGCTGAGGCTTCCATGCTATTGTTGTGCACCTGGGTGCAAGAACAACATCGAGCATCCCAGAGCTAAACCTCTAAAAGACTTCAGAACCCTTCAAACCCATTACAAGAGAAAGCACGGGATAAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCACGAGAAGAACTGTGGCAAACTCTGGTATTGCTCCTGTGGCTCTGACTTCAAGCATAAAAGATCTCTTAAGGATCATGTCAAGGCTTTCGGACATACCCACACGCCTTGTGGTGTTGACTGTCTCCATCAGGATGAAGTGCCCTCTGAAATTGACCACCCAAATGACTCCTTTCATTCTCATCATAACTAA 945 0.4762 MTDPYCPEAFNSPFLFSSSFNFPCAHFNSSSLALPSSPPPREALPLLNLSPPRHDEDDMQVDIKQKEGGTGCGSLNDDPVTLALQLHLGLPTPSSSSPDLADSNLCSSETVSDKDEVTTVSSGYLSDRITPGGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRRGPESLRGTQPTAMLRLPCYCCAPGCKNNIEHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVKAFGHTHTPCGVDCLHQDEVPSEIDHPNDSFHSHHN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4405g00002 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Pral4405g00002 314 SUPERFAMILY beta-beta-alpha zinc fingers 146 173 IPR036236 -
Pral4405g00002 314 MobiDBLite consensus disorder prediction 31 56 - -
Pral4405g00002 314 Gene3D Classic Zinc Finger 149 172 - -
Pral4405g00002 314 SUPERFAMILY beta-beta-alpha zinc fingers 216 254 IPR036236 -
Pral4405g00002 314 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Pral4405g00002 314 MobiDBLite consensus disorder prediction 92 112 - -
Pral4405g00002 314 FunFam Zinc finger protein WIP2 203 285 - -
Pral4405g00002 314 PANTHER ZINC FINGER PROTEIN WIP2 18 298 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4405g00002 Pral-Chr4405 6590 8747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4405g00002 14 296 C2H2 Transcription Factor Family AT1G51220 61.616 6.83e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4405g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4405g00002 - - qsa:O6P43_000130 438.728