Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4404g00039 ATGGCGACCGCTTCCCAGGGTTATCATCAACCTTCCTCGATCGAGGAAGTTCGAACTCTTTGGATTGGGGATTTGCAGTACTGGGTCGACGAAAATTACCTTAGTCACTGCTTCGCGCACACCGGAGAGGTAGTTTCCATAAAGATCATACGTAACAAGATAACTGGACAACCTGAGGGCTATGGATTTGTGGAGTTTGTTTCTCATGCGGCAGCAGAACGGATTCTGCAAACTTACAATGGGACACAAATGCCTGGAACAGAACAGACTTTCAGGTTGAATTGGGCATCTTTTGGTATTGGGGAGAGGCGTCCTGATGCTGGTCCTGAGCACTCAATTTTTGTGGGGGACCTAGCACCTGATGTTACAGATTATCTTCTGCAGGAGACATTCCGAGCCCATTATCCTTCAGTTAGAGGTGCTAAAGTAGTGACGGATCCTAATACGGGGCGTTCCAAGGGATATGGGTTTGTTAAGTTTTCTGACGAGACTGAAAGGAATCGTGCTATGAGTGAAATGAATGGTGTTTATTGCTCAAGTAGGCCAATGCGTATCAGTGCTGCAACCCCCAAAAAGACCACTGGTTTCCAACAGCAATATGCTGCAGCTAAAGCTGTATATCCAATCCCGGCATATACTACCCCAGTAAATGCAGTTCCACCAGAATATGATATGAATAATACAACTATTTTTGTTGGCAATTTGGATCTTAATGTCACAGAAGAAGAACTGAAGCAAACCTTTCTGCAATTTGGGGAAATTGTATCCGTCAAGATTCAGGCTGGCAAAGGATGTGGTTTTGTTCAATTTGGGACAAGACCATCTGCTGAAGAATCCATTCAGAGGATGCAGGGAAAGATGATAGGTCAGCAAGTGGTTAGAATTTCTTGGGGTAGGAGCTTGACAGCTAGACAGGACTTGCCTGGTGGCTGGGGAGCACAGATGGATCCGAGCCAATGGAGTGCCTACTATGGCTATGGGCAGGGGTATGAAGCCTATGCTTATGGGGCAGCTCAAGATCCTTCTTTGTACGCTTATGGTGCATATGCTGGTTATGCACAGTACCCCCAACAAGTTGAAGGTGCTCAGGACACGGCATCTATGACGATGCTGAATATGGAACCAAGGGAGGAGTTGTATGATCCCCTGGCTATGCCTGATGTTGACAAGCTGAACGCTGCATATCTATCAGTACATGGAAGTGCCATCTTAGGGCGGTCCCTCTGGCAGAAAACCTCGCCCTTCACACAGGCAGCCTAG 1260 0.4698 MATASQGYHQPSSIEEVRTLWIGDLQYWVDENYLSHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMSEMNGVYCSSRPMRISAATPKKTTGFQQQYAAAKAVYPIPAYTTPVNAVPPEYDMNNTTIFVGNLDLNVTEEELKQTFLQFGEIVSVKIQAGKGCGFVQFGTRPSAEESIQRMQGKMIGQQVVRISWGRSLTARQDLPGGWGAQMDPSQWSAYYGYGQGYEAYAYGAAQDPSLYAYGAYAGYAQYPQQVEGAQDTASMTMLNMEPREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWQKTSPFTQAA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4404g00039 419 CDD RRM1_SECp43_like 19 99 - -
Pral4404g00039 419 Gene3D - 215 305 IPR012677 -
Pral4404g00039 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 98 IPR000504 GO:0003723
Pral4404g00039 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 88 IPR000504 GO:0003723
Pral4404g00039 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 293 IPR000504 GO:0003723
Pral4404g00039 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Pral4404g00039 419 SMART rrm1_1 19 94 IPR000504 GO:0003723
Pral4404g00039 419 SMART rrm1_1 229 296 IPR000504 GO:0003723
Pral4404g00039 419 SMART rrm1_1 112 186 IPR000504 GO:0003723
Pral4404g00039 419 SUPERFAMILY RNA-binding domain, RBD 9 86 IPR035979 GO:0003676
Pral4404g00039 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 300 IPR000504 GO:0003723
Pral4404g00039 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 190 IPR000504 GO:0003723
Pral4404g00039 419 Gene3D - 17 97 IPR012677 -
Pral4404g00039 419 Gene3D - 100 207 IPR012677 -
Pral4404g00039 419 FunFam Polyadenylate-binding protein RBP47B 17 97 - -
Pral4404g00039 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 304 - -
Pral4404g00039 419 SUPERFAMILY RNA-binding domain, RBD 104 199 IPR035979 GO:0003676
Pral4404g00039 419 CDD RRM2_SECp43_like 110 189 - -
Pral4404g00039 419 SUPERFAMILY RNA-binding domain, RBD 207 329 IPR035979 GO:0003676
Pral4404g00039 419 FunFam polyadenylate-binding protein RBP45 211 307 - -
Pral4404g00039 419 FunFam Polyadenylate-binding protein RBP47B 99 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4404g00039 Pral-Chr4404 209779 214767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4404g00039 17 318 Eukaryotic Initiation Factors Gene Family AT2G23350 27.419 2.25e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4404g00039 - - tpra:123894020 702.205