Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4404g00038 ATGGCCGAAACACCTAGCAAGTCTCTTCGATCTCCCACAAAATGCAAACAACAATCCCATTTGGATGCTAACTCCTCACCCTCAGTTAACCCTGTAACTCCACAATCAGTAGCTCCGCGCAGATCGACTCGCCGTAAGTTGCTGGCCTTTGATTCTGTCGATCCTCAAAAGCCTCTCAATTGCATTGATGAACTCTGTGAACATCCGTCCAAAGCTCCAAATAAGGATAAAGCTCGGGAAAGAAGAAATTTGAACAGGTCTCGTCGATCAATCGATTATGCTGAAGAACCCTGCAAAGGTAAAGTGACAACCCGTAGAAATAGAACTAGGGAAAACGTTTCAATCGGCAAAGCACATAAAAAAGAGAGCAACTCTGGATCTGCAAAATGCCCGACATCTACTCCAAGGGGCGAAACTTCGAAGAGGAGAAATGACAAAGATTCGGATTCAGCTAAAGTTCCTATTGCCCCAGTGTCGCCTGACCAATCGGAAACTAAGAAGAGAAAGAGGATTGATGAAAGAAGGGTTGTTACAAGAGCTATGGTTGCAAGAAGTAGGAAATCTGAGAAGGGGCAAAAGAGCAATGTCTTGCCTAAGAGACGGGTGTATTATAAAAAAGTCGTATATGATGGGGGTGAGTTCGAAGTAGGCGATGATGTTTATGTGAAGAGGAGGGAAGAAACTGACTCAGATAATGAATTCCCAGAAGTGGAGGAATGCAGGTTGTGTTTTAGTTCTGGGGATGATGTTATGATTGAGTGTGATGATTGTTTAGGTGGCTTTCATTTGAAATGTTTGACTCCACCATTAAAGGATGTTCCGGAAGGAGATTGGATTTGTGGTTTTTGTGAGGCTCGTAAGATAGGCAGAGATGTTGGCTTTCCCATGCCTCCGGAGGGTAAGAAACTAGTTAGGACATTGAGGGAAAAGCTTCTTTCCAGTGATTTGTGGGCTGCTCACATTGAAAGTATGTGGAAAGAAGGGGATGGTACCTACTGTTGTCGTGTCAGGTGGTATGTGATCCCAGAAGAGACAGCTATTGGGAGACAACCTCATAATCTGAAGAGGGAGCTATATAGAACAAATGATTTTGCAGACATTGAGATGGAATCCATCATTAGACATTGCTTTGTCATGACTCCCAAAGAATTTGCCAAGGCCAACGAGGGGGATGATATTTTCTTTTGTGAATATGAATATGACGTTCATTGGCACGCTTTCAAGCGTCTTGCTGAGATTGACAATGACAATGAGGTTGGTGAAGAATCTGATAGTGATGAAGATTGGAATCATTGCAAGGAGTCAGACTTTGATACAGATGATGATGTTGAATACGATGCAGAGAATACAAAAGATTCACGACCTCAGTCATCATCAAATCATGCACCAGCTGCTAATCTGCGTAAGGGGCAATTTTTTGGACTTCAAAAGATAGGCACCAAAAAAATTCCACAGTTCATAAGGAATCACAAACAAACTGATATTGAGAGAGCAAAGGCTATGCTGTTGCTGGCATCGTTACCTAAATCTTTACCTTGTAGGAATAAAGAAATGGAGGAGATAACCTCATTTGTAAAAGGTGCCATCTGTGATGATCAATGTCTAGGACGTTGTTTGTACATCCATGGTGTTCCTGGAACTGGGAAGACAATGAGTGTACTATCAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAACCATACGACCGTACTGTTTTGTAGAGATTAATGGTTTGAAATTGGCGTCTCCAGAGAATATTTACAGGGTCATATATGAAGCATTAAATGGTCACAGGGTCAGCTGGAAAAAGGCCCTTCACTTGTTAAATGAGAGATTCGTGGAGGGGAAGAAAAGCGGAGAAAAGGCTGATCAGCCATGCATTCTTCTAATTGATGAACTCGATCTTCTTGTAACCAGAAATCAGTCGGTGCTTTATAATATTCTTGATTGGCCTACTAAGCCGCATTCCAAACTAATTGTGATAGGGATTGCAAATACCATGGATCTTCCAGAGAAGTTACTTCCTCGCATATCAAGTCGAATGGGCATCCAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCTTGAAGGGAATAGATGTGTTCGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGGGATGCACGCCGTGCTTTGGAAATATGCAGACGTGCTGCAGAAATTGCAGATTATCGTATTAAAAAGCTGCATTCAAATTCTGACTTAGCTGCATCAGGAAAAGGACTTGTTGCTATGGCGGATGTTGAAGCTGCCATCCAAGAAATGTTTCAGGCTCCGCATATTCAAGTGATGAAAAGCTGTTCTAGGCTTGGTAAAATCGTTTTGACAGCCATGGTGCACGAGCTTTATAAAACAGGAATGGGCGAAACTACTTTTGAGAAGCTGGCAATGACGGTATCGTGTCTCTGCACCAGCAACGGAGAGGTTTTTCCTGGATATGATACGCTCCTGCAAGTTGGATGTAGGCTGGGCGAATCCAGGATTCTTTTGTGCGAAGCAGGTTCCAAGCACAGGTTGCAGAAGTTGCAGCTCAACTTCCCTAGTGATGATGTGGCGTTTGCGCTGAGAAACTGCAAGGATTTACCCTGGCTGGCCAAGTATCTAGTTTAG 2679 0.4296 MAETPSKSLRSPTKCKQQSHLDANSSPSVNPVTPQSVAPRRSTRRKLLAFDSVDPQKPLNCIDELCEHPSKAPNKDKARERRNLNRSRRSIDYAEEPCKGKVTTRRNRTRENVSIGKAHKKESNSGSAKCPTSTPRGETSKRRNDKDSDSAKVPIAPVSPDQSETKKRKRIDERRVVTRAMVARSRKSEKGQKSNVLPKRRVYYKKVVYDGGEFEVGDDVYVKRREETDSDNEFPEVEECRLCFSSGDDVMIECDDCLGGFHLKCLTPPLKDVPEGDWICGFCEARKIGRDVGFPMPPEGKKLVRTLREKLLSSDLWAAHIESMWKEGDGTYCCRVRWYVIPEETAIGRQPHNLKRELYRTNDFADIEMESIIRHCFVMTPKEFAKANEGDDIFFCEYEYDVHWHAFKRLAEIDNDNEVGEESDSDEDWNHCKESDFDTDDDVEYDAENTKDSRPQSSSNHAPAANLRKGQFFGLQKIGTKKIPQFIRNHKQTDIERAKAMLLLASLPKSLPCRNKEMEEITSFVKGAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGTIRPYCFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKSGEKADQPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRIKKLHSNSDLAASGKGLVAMADVEAAIQEMFQAPHIQVMKSCSRLGKIVLTAMVHELYKTGMGETTFEKLAMTVSCLCTSNGEVFPGYDTLLQVGCRLGESRILLCEAGSKHRLQKLQLNFPSDDVAFALRNCKDLPWLAKYLV 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4404g00038 892 MobiDBLite consensus disorder prediction 417 464 - -
Pral4404g00038 892 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 344 886 - -
Pral4404g00038 892 Pfam BAH domain 320 408 IPR001025 GO:0003682
Pral4404g00038 892 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 295 IPR013083 -
Pral4404g00038 892 ProSiteProfiles BAH domain profile. 295 411 IPR001025 GO:0003682
Pral4404g00038 892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 752 IPR027417 -
Pral4404g00038 892 MobiDBLite consensus disorder prediction 1 44 - -
Pral4404g00038 892 MobiDBLite consensus disorder prediction 136 150 - -
Pral4404g00038 892 Pfam PHD-finger 240 285 IPR019787 -
Pral4404g00038 892 Gene3D - 491 686 IPR027417 -
Pral4404g00038 892 MobiDBLite consensus disorder prediction 68 124 - -
Pral4404g00038 892 FunFam Origin recognition complex subunit 1 303 494 - -
Pral4404g00038 892 FunFam Origin recognition complex subunit 1 688 780 - -
Pral4404g00038 892 MobiDBLite consensus disorder prediction 65 195 - -
Pral4404g00038 892 SMART BAH_4 212 411 IPR001025 GO:0003682
Pral4404g00038 892 SMART AAA_5 535 689 IPR003593 GO:0016887
Pral4404g00038 892 SMART PHD_3 239 284 IPR001965 -
Pral4404g00038 892 Gene3D - 687 780 - -
Pral4404g00038 892 ProSiteProfiles Zinc finger PHD-type profile. 237 286 IPR019787 -
Pral4404g00038 892 Gene3D - 183 436 IPR043151 -
Pral4404g00038 892 SUPERFAMILY FYVE/PHD zinc finger 228 287 IPR011011 -
Pral4404g00038 892 FunFam Origin recognition complex subunit 1 235 302 - -
Pral4404g00038 892 MobiDBLite consensus disorder prediction 162 195 - -
Pral4404g00038 892 Pfam AAA lid domain 713 747 IPR041083 -
Pral4404g00038 892 Pfam ATPase family associated with various cellular activities (AAA) 540 685 IPR003959 GO:0005524|GO:0016887
Pral4404g00038 892 ProSitePatterns Zinc finger PHD-type signature. 240 283 IPR019786 -
Pral4404g00038 892 FunFam Origin recognition complex subunit 1 492 691 - -
Pral4404g00038 892 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4404g00038 Pral-Chr4404 202028 208609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4404g00038 2 891 Core DNA Replication Machinery Family AT4G14700 58.974 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4404g00038 AAA 5.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4404g00038 K02603 - gmx:100798547 1294.26