Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4404g00022 ATGTCATCCCCAACGGCATCGCACTGGTGTTACAGGTGCTCCCGCTTTGTTCGTCTCTCCAATGCTCAGGACCACATTTCTTGCCCCTTCTGCCGGAGTGGCTTCGTCGAAGAGATCCTGGCCAACCCATTATCGGACCGTCGTCTCAGCCCATCTCCGTCTGCGACCATGTCCATCTTCACCCTTGAACCTCAGAATTCCTTCCATTTGAGGAGACAAGGGCTCCGGAGGAGAAGCCGTAATGCCGGCGGCCACTCTTCCTTTAACCCGGTGATTGTTCTTCGCGGACCCGCCCAGGGTGGTGCTGGAGAAGACGGTGCAGGTCATGAAAGAAGTAGCAGCTTCCATCTGTACTATGATGACGGTGATGGCTCCGGTCTCCAACCGTTACCGCCGAATATCTCGGACTTATTGCTCAGGTCAGGCTTCGATCGGTTGTTGGAGCATTTTTCTCAGGCAGGAAATAATGGCCTCGAGCGGTTGGAGAACCTACCGGCGTCCAAAACGGCCATTGGATCAATGCCGACGATTGAGATAGGGGAGGGCCATGTGAGTACGGATACACACTGTGCCATTTGTAAAGAAGCGTTTGAGCTCGGTTCAGAGGCGCGAGAAATGCCTTGCAAGCACATTTACCATTCGGACTGCATTGTTCCGTGGCTTTCAACGTGCAACTCGTGCCCTGTGTGTCGCAACGGGTTGCCTTTGGATGGAAACAATCGGGAAAGCAGAGTCTCCAGGCAAATCGATGAAGAAACGATTGGATTGACGATATGGAGGCTACCAGGCGGAGACTTCGCCGTAGGAAGGTTTCCCCACGATGAAGGTGATGGAGAGAGTCATTTGCCAGTTGTATCCACAGAAATGGATGGTGTGCTCAGCGCAAATAGCGTTCCTAGAAGAGTCTCCCGAGCAATGAGAGGTATCAGACTTCACGAAAGTCGTGGATTGAACAGAATATCTCGCAACTTCTTGGCATTCTTCGGGAGGCTAGGGTCTAGGTCAACTTCATCCTCCTCTTCATATTCCATTTCTCAAGATGGAACCATGAGTAGAAGCCTCAGGCAGTTGAGTTCGGTATTCACAAGGAACTCGCAGAGCCAAAGTAGAAATTGGATAATGGAAGATTAA 1131 0.5155 MSSPTASHWCYRCSRFVRLSNAQDHISCPFCRSGFVEEILANPLSDRRLSPSPSATMSIFTLEPQNSFHLRRQGLRRRSRNAGGHSSFNPVIVLRGPAQGGAGEDGAGHERSSSFHLYYDDGDGSGLQPLPPNISDLLLRSGFDRLLEHFSQAGNNGLERLENLPASKTAIGSMPTIEIGEGHVSTDTHCAICKEAFELGSEAREMPCKHIYHSDCIVPWLSTCNSCPVCRNGLPLDGNNRESRVSRQIDEETIGLTIWRLPGGDFAVGRFPHDEGDGESHLPVVSTEMDGVLSANSVPRRVSRAMRGIRLHESRGLNRISRNFLAFFGRLGSRSTSSSSSYSISQDGTMSRSLRQLSSVFTRNSQSQSRNWIMED 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4404g00022 376 SUPERFAMILY RING/U-box 170 237 - -
Pral4404g00022 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 236 IPR013083 -
Pral4404g00022 376 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Pral4404g00022 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 232 - -
Pral4404g00022 376 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Pral4404g00022 376 SMART ring_2 190 230 IPR001841 -
Pral4404g00022 376 Pfam Ring finger domain 189 231 IPR001841 -
Pral4404g00022 376 CDD RING-H2_RNF126-like 190 231 - -
Pral4404g00022 376 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Pral4404g00022 376 MobiDBLite consensus disorder prediction 96 115 - -
Pral4404g00022 376 Pfam Protein of unknown function (DUF1117) 254 365 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4404g00022 Pral-Chr4404 117664 118794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4404g00022 127 242 C3H Transcription Factor Family AT5G01980 43.966 3.20e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4404g00022 K11982 - gmx:100804867 396.356