Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00121 ATGGTCTCAATCAGGCCTGGATCGATGGCGGATCGAGCCCGGCTTGCAAAGATACCACCGCCGGAGGCAGCTCTAAAGTGTCCTCGCTGTGAATCTACCAACACGAAATTCTGCTACTTCAACAACTACAGCCTGTCTCAACCCAGGCACTTCTGCAAGACCTGTAGGCGTTACTGGACAAGAGGAGGCGCTCTCAGGAACGTTCCGGTTGGCGGAGGATGCCGCAGAAACAAGAAGACCAAGAAGAAGCCGCTCCAAGTCTCCGGCAGCCTCCGACAAACAGCCACCGTCTAA 294 0.5544 MVSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKTKKKPLQVSGSLRQTATV 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00121 97 MobiDBLite consensus disorder prediction 71 97 - -
Pral4402g00121 97 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
Pral4402g00121 97 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Pral4402g00121 97 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Pral4402g00121 97 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 84 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00121 Pral-Chr4402 527818 528282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00121 4 81 C2C2-Dof Transcription Factor Family AT2G37590 87.179 7.08e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral4402g00121 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00121 - - pcin:129316822 176.407