Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00096 ATGTCTTTAAATTCCACGAAGCCTGATGAACCTTTGGAATGGAATGCGAAAGAGACTGTTTCAATAATTATTTTCTGCATCGTTTTCCTTTTACTGAGTTACTACAGCGTATTGAAGCGTATTTGTTGTGCAAATTCTTCTGGAAACCAAGTTCAGAGGCGACTTCTAGAGGAATCCAATCAAGATGATCCTTCTCTACAGTTTGAAAGGCACGGTTTAGAGTTATCCGTAATCCAGTCTCTGCGCATGTCCTTGTTTAAGAAAAGCGAGGGGGAAGAGAAGCCGAACCGCGCAGACTGTGCCATATGCTTAGGTGAGTTTGAAGAAGGGGAATGGCTGAAACATCTTCCAAACTGCACCCATGCCTTCCATGTTTCCTGCATTGACTTTTGGCTCCAGTCCCGCTCAAATTGTCCTCTTTGCCGAACTCACGTCCATCTCCACCTCAATTCTAATCTACAATCTTCCGGATCTTCCAACTCCCCTGCCCCTGAGGCTCTAAATGGTCTGACCATAAGATAG 522 0.4464 MSLNSTKPDEPLEWNAKETVSIIIFCIVFLLLSYYSVLKRICCANSSGNQVQRRLLEESNQDDPSLQFERHGLELSVIQSLRMSLFKKSEGEEKPNRADCAICLGEFEEGEWLKHLPNCTHAFHVSCIDFWLQSRSNCPLCRTHVHLHLNSNLQSSGSSNSPAPEALNGLTIR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00096 173 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Pral4402g00096 173 MobiDBLite consensus disorder prediction 152 166 - -
Pral4402g00096 173 SUPERFAMILY RING/U-box 99 148 - -
Pral4402g00096 173 Pfam Ring finger domain 99 142 IPR001841 -
Pral4402g00096 173 SMART ring_2 100 141 IPR001841 -
Pral4402g00096 173 PANTHER RING-H2 FINGER PROTEIN ATL16 22 153 IPR044600 GO:0016567|GO:0016740
Pral4402g00096 173 MobiDBLite consensus disorder prediction 152 173 - -
Pral4402g00096 173 CDD RING-H2_EL5-like 99 142 - -
Pral4402g00096 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00096 Pral-Chr4402 440820 441341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00096 22 162 C3H Transcription Factor Family AT1G04360 39.333 1.01e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00096 - - aprc:113859782 173.326