Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00062 ATGTTCGACCTTAATCTGAATGCCGATTCGACTGATGCCTCTCGTAACGATGAACTCATCAGGTTCTCTGACGAGCTAACGGAAGCCTCAGGGAATCAAATGGCGAAATCGGGGACTTCCAATTCCTCTAATGTCTATGCTGACGGGTCCAGCAATGGAGGAGATGAGGACTCCTGCTCTACACGCGGTGGGGACGCCTTCACCTTTAATTTCGATATCCTTAAGGAGGAAGGCGTGCAAGAAGTCGCAACCAAGGAGCTATTTCTGTTTAATGAAACTAAAGGGGTGGACGGCGAGTCTGCGAATTGGCAGGGTCAGTCCTTGTCTGCCCTTCCATCGAGAAAGAGCTGGATGAGTCTTTCCTTTGATCATCAGGTTGGTAACGGAGAGATGAAGATGGTCCAAGTTCAGCAACAACCACGACAGCAAGTAAAGAAGAGCAGAAGGGGTCCAAGGTCTCGGAGCTCGCAGTACAGAGGGGTCACCTTTTACAGAAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAGCAAGTCTATTTGGGTGGTTTTGATACTGCTCATGCCGCTGCCAGAGCCTACGACCGTGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAATCTCAATGATTACGAGGAGGATCTTAAGCAGACGAAAAATCTCACCAAAGAGGAATTCGTACACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGGGGGAGCTCAAAATACCGAGGAGTAACACTGCACAAGTGTGGTCGCTGGGAGGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATGCAACGGAAGGGAGGCAGTGACCAACTTTGAACTAAGAACATACGAAGGGGAGATGAAGCCTGAGGTCATTACTGAAGGTGGCGGTCATAATCTTGACCTCAAATTGGGCATAGCTACACCAGGCAGTGGCCTAGAAGAAAATAGGGGCCTTCAGTTGCAACCTATCCCTTACAACATGCTAACTGGAAGAAGTTCAAGGATGGATATCAATATTGATTCAGCAAATGGTGATCCATCGCTGAAAAGGCCAGTTGGTACTGAGGAGCGTCCTTTTGCATGGAATGGCGTCTATCCTGGTTTCTTTCCTAACCAGGAAAGGGTTAAGAGAATCAGTAGAGATCATTCACAAGGACTGCCTCAATGGGGCTGGCAAACGCAAGGCCAGGTTCCTGCTACGCCATTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCATTCCATTGGCTACCATCTTTCCAACAAAATCTCTGAGCTTGACCTCAGTTCCCCGTGATATCTGTTTTGATCCATCTAGTGCAGCCGGAGGCAACACAACTCAACATTGCCAGATGAAGTCCCCGCACGCAGCCCCCTAG 1479 0.4834 MFDLNLNADSTDASRNDELIRFSDELTEASGNQMAKSGTSNSSNVYADGSSNGGDEDSCSTRGGDAFTFNFDILKEEGVQEVATKELFLFNETKGVDGESANWQGQSLSALPSRKSWMSLSFDHQVGNGEMKMVQVQQQPRQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLNDYEEDLKQTKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFELRTYEGEMKPEVITEGGGHNLDLKLGIATPGSGLEENRGLQLQPIPYNMLTGRSSRMDINIDSANGDPSLKRPVGTEERPFAWNGVYPGFFPNQERVKRISRDHSQGLPQWGWQTQGQVPATPLPPFSTAASSGFSISATIPLATIFPTKSLSLTSVPRDICFDPSSAAGGNTTQHCQMKSPHAAP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00062 492 MobiDBLite consensus disorder prediction 30 59 - -
Pral4402g00062 492 FunFam AP2-like ethylene-responsive transcription factor 248 308 - -
Pral4402g00062 492 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 121 337 - -
Pral4402g00062 492 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Pral4402g00062 492 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
Pral4402g00062 492 Gene3D AP2/ERF domain 248 308 IPR036955 GO:0003700|GO:0006355
Pral4402g00062 492 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Pral4402g00062 492 CDD AP2 248 306 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 MobiDBLite consensus disorder prediction 135 158 - -
Pral4402g00062 492 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Pral4402g00062 492 MobiDBLite consensus disorder prediction 30 58 - -
Pral4402g00062 492 CDD AP2 157 212 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Pral4402g00062 492 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00062 Pral-Chr4402 306601 311060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00062 105 332 AP2-EREBP Transcription Factor Family AT4G36920 72.152 5.54e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral4402g00062 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00062 K09284 - qsa:O6P43_000276 632.098