Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00057 ATGGATCCTTCCCGTGCACAACACCAGCAAATGTCTAACGAATCACTGGAGAATATGATAGCTTGCTCAAAAGCACAGCAAGAGAGGAAGCCGAGACCTCAGCCGGAAGAAGCACTAAAGTGCCCAAGATGTGACTCCACCAACACCAAATTCTGTTACTACAACAATTACAGTCTTTCTCAGCCGAGATACTTCTGCAAGTCATGCAGGAGATATTGGACCAAAGGAGGAACATTAAGGAATGTTCCAGTGGGTGGAGGCTGCAGGAAGAACAAGAGATCTTCATCATCAAAGAGGGCTCAAGATCAACCTCTCACCCCCCACAACAACCCACTCGCTTCCATCCCTTCCTTATCTTATGATTCTAATGACCTCACCCTCGCATTAGTTAGGCTCCAAAAACAATCTTCTGGGCAATTGGGCTATGATGACCATGATCTATCAATTTTGGGGAACCCCACTAGCTCCCATTATGATATCCTCGGCAACACCACAAATCCTGGCTTTTTAGATGCATTTCGAACTGGATTCGTGGAAACCCAGCAGAATAATAATTTGCAGAACCTGTATTGCGGATATGGAAACGGGGACATGGGAGAAGTGGACAATGGAAACGCAGAGATGATGCTCCCGTATGATCAAGAAATCAATAATGCACCCACAACGCAAGCAGTGTCGGTCACTACTATGAAGCAAGAAATAATGTGTAATGGAAGAGAACAAAGTGAAAACAAGGTGTTGTGGGGTCTTCCATGGCAGTTCAATGGGGACATGAACATGGGAGGGCTCGATTCAGGAAGAGCAAGTTGGAACAATGGTCTCGGTTCATCCTGGCACGGTCTTCTCAATAGTCCGCTAATGTAG 864 0.4595 MDPSRAQHQQMSNESLENMIACSKAQQERKPRPQPEEALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSKRAQDQPLTPHNNPLASIPSLSYDSNDLTLALVRLQKQSSGQLGYDDHDLSILGNPTSSHYDILGNTTNPGFLDAFRTGFVETQQNNNLQNLYCGYGNGDMGEVDNGNAEMMLPYDQEINNAPTTQAVSVTTMKQEIMCNGREQSENKVLWGLPWQFNGDMNMGGLDSGRASWNNGLGSSWHGLLNSPLM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00057 287 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Pral4402g00057 287 MobiDBLite consensus disorder prediction 84 117 - -
Pral4402g00057 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 197 IPR045174 GO:0003700|GO:0006355
Pral4402g00057 287 MobiDBLite consensus disorder prediction 1 22 - -
Pral4402g00057 287 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Pral4402g00057 287 MobiDBLite consensus disorder prediction 1 39 - -
Pral4402g00057 287 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Pral4402g00057 287 MobiDBLite consensus disorder prediction 98 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00057 Pral-Chr4402 269109 271116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00057 1 287 C2C2-Dof Transcription Factor Family AT2G28510 39.577 9.53e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pral4402g00057 zf-Dof 4.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00057 - - gmx:100799737 429.098