Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00049 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCCTTCTGCGCTGGGCACTGTGAGCAAGGCGCTTGTGCTTCATGTTTCGCCTCTTCCACTTCTTCATCTTCCAATTCGCCTTCACCTCGCGTGTCTTCTTCTTATCTCGAACTCTGGCATGCTTGTGCTGGCCCCCTCACCTCCCTTGCCAACAAAGGAAATGTAGTAGTCTACTTTCCCCAGGGTCATCTTGAACAGCTTGCTTCTTTCTCTCCTTTCTCGCCCATGGACATGCCCACTTATGACCTTCAACCGCAAATCTTCTGCAGGGTCGTCAATGTCCAGCTTCTTGCCAACAAGGAGAATGACGAGGTTTACACGCAAGTTACTCTGTTTCCCCAGGCAGAGTTGGCAGCGGTGCACTTGGAGGGCCAAGAACTTGAGAAATTGGGAGCATTTCAGGAGGAAAATGGAGGATTACCTGCAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCTTCAGACACTAGCACTCACGGGGGTTTCTCTGTTCCTCGCAGAGCTGCTGAAGATTGCTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCCCAGGAGCTTGTTGCAAAAGACCTGCATGGAGTAGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGACGGCATCTGCTCACAACTGGCTGGAGTATTTTTGTCAGCCAAAAGAATCTTGTATCTGGCGATGCAGTACTCTTTCTGAGGGGTGAAAGCGGAGAACTGAGATTGGGAATCAGAAGATCTGTTCGACCTAGAAATGGTCTTCCCGAGTCAATTATTGGTGATCAGAATTGCTATCCCAATTTCCTATCTTCAGTGGCTAATGCTATATCCACCAAAAGTGTGTTTCATGTTTTCTACAGCCCAAGGGCAAGTCATGCGGAGTTTGTTGTCCCCTACCAGAAATATGTCAAAAGCATCAAGAATCCAATGACCATTGGAACAAGATTTAAGATGAAATTCGAAATGGATGAATCTCCCGAAAGAAGGTGTAATGGTGGTATAGTGACGGGAATGCGTGATTTGGATCCCTATAGATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTAAAATGGGATGAGGATTTTGCTACTAATCATCAAGATCGAATTTCTCCATGGGAGATTGAGCCTTCCGTTTCTCTCCCCCCCTTGAGCATTCAGTCATCCCCAAGACTAAAGAAATTGCGGACAGGTCTGCATGCTGCCCCATCAAGTCACCTCATGACCGGTGGCGGTGCATTTATGGACTTTGAGGAGTCTGTAATATCACCTAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGCATCATACTATTTTGGGCGTGATGCAGTGACCAACCAGCCAGATTTTGAGATGAGTCCTCTTAGTCATCCAAATCTTGCATCCAATGGATTAAGAAAGGCTACTGCTGCTGAACTTACGAGGGTTCACCCTTCAAGTTATGCAGGCTTTGCAGAGACTAATAGGTTTCTGAGGGTCTTGCAAGGTCAAGAAATAGGTCCACTGCAATCCCTGAAAGGAAAGGCTGATTTTAACCTTGGGGCATGGGGTAAACCCAATGCCAGTTGCACAACTTTCAACCAGCGTCAGGCATGCAAATCCAACTTCAATACTTCTGGATCAAAAGGCCTTATAACTTCTAATTTCCCTTACGGTGACATTCACCGAGCTGGTCAAAGTAGCTTGTTGAGCTCTAAACCTGCAAATTTCCAGATAGAGAATGTCCACACTCCTTCCACTCAGGCAGAGCTCTCAACAAAGGAAGTTGGACGCTCGGATCTGTCAAACAAGGATAAGCTACAGGATAGTTTTTCTACTGCTGCTTCTTTAGGAGCAAGTCTAAGGATTCCAAGTGATGAAAATTTTGAGGGAAAGGTAAATGGCTGTAAACTATTTGGATTTCCCTTATCTGGAGAAGGCAACTCTCAGAATTTACAGAACTCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTGAACAGCTACAATGATTTGTTGAGTGAACTAGAGCGACTGTTTGGCATGGAAGGCCTTATAAAGGATCCTGATAAAGGATGGAGGGTCCTGTACACCGATAGTGAAAATGACATAATGGTTGTAGGGGATGACCCATGGCATGAGTTCTGCAGTGTGGTGTCTAAGATCCATATATATACCGAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCACTGATGATACCCAGAGCTGTTTGGAACAGGCACCAGGAGTGACGGAGGCTTCCAAGTCCTCATCTGTGGGCCAGCCAGATTCTTCTCCAACAGAAGTGTAG 2391 0.4567 MEIDLNHAVTEVEKNAFCAGHCEQGACASCFASSTSSSSNSPSPRVSSSYLELWHACAGPLTSLANKGNVVVYFPQGHLEQLASFSPFSPMDMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLFPQAELAAVHLEGQELEKLGAFQEENGGLPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRSVRPRNGLPESIIGDQNCYPNFLSSVANAISTKSVFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMKFEMDESPERRCNGGIVTGMRDLDPYRWPKSKWRCLMVKWDEDFATNHQDRISPWEIEPSVSLPPLSIQSSPRLKKLRTGLHAAPSSHLMTGGGAFMDFEESVISPKVLQGQENTGFASYYFGRDAVTNQPDFEMSPLSHPNLASNGLRKATAAELTRVHPSSYAGFAETNRFLRVLQGQEIGPLQSLKGKADFNLGAWGKPNASCTTFNQRQACKSNFNTSGSKGLITSNFPYGDIHRAGQSSLLSSKPANFQIENVHTPSTQAELSTKEVGRSDLSNKDKLQDSFSTAASLGASLRIPSDENFEGKVNGCKLFGFPLSGEGNSQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYNDLLSELERLFGMEGLIKDPDKGWRVLYTDSENDIMVVGDDPWHEFCSVVSKIHIYTEEEVEKMTIGMITDDTQSCLEQAPGVTEASKSSSVGQPDSSPTEV 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00049 796 Gene3D - 328 400 - -
Pral4402g00049 796 FunFam Auxin response factor 665 759 - -
Pral4402g00049 796 FunFam Auxin response factor 327 400 - -
Pral4402g00049 796 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4402g00049 796 Gene3D - 162 266 IPR015300 -
Pral4402g00049 796 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 759 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4402g00049 796 Gene3D - 666 759 - -
Pral4402g00049 796 MobiDBLite consensus disorder prediction 773 796 - -
Pral4402g00049 796 CDD B3_DNA 162 264 IPR003340 GO:0003677
Pral4402g00049 796 ProSiteProfiles PB1 domain profile. 670 752 IPR000270 GO:0005515
Pral4402g00049 796 Pfam AUX/IAA family 663 754 IPR033389 -
Pral4402g00049 796 SUPERFAMILY CAD & PB1 domains 672 749 - -
Pral4402g00049 796 SUPERFAMILY DNA-binding pseudobarrel domain 156 271 IPR015300 -
Pral4402g00049 796 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 22 30 IPR006058 GO:0051537
Pral4402g00049 796 SMART B3_2 164 266 IPR003340 GO:0003677
Pral4402g00049 796 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Pral4402g00049 796 MobiDBLite consensus disorder prediction 596 616 - -
Pral4402g00049 796 FunFam Auxin response factor 162 266 - -
Pral4402g00049 796 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00049 Pral-Chr4402 209453 215836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00049 47 794 B3 DNA Binding Superfamily AT5G60450 61.141 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4402g00049 AUX_IAA 2.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00049 - - gmx:100812909 1221.84