Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00048 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCCTTCTGCGCTGGGCACTGTGAGCAAGGCGCTTGTGCTTCATGTTTCGCCTCTTCCACTTCTTCATCTTCCAATTCGCCTTCACCTCGCGTGTCTTCTTCTTATCTCGAACTCTGGCATGCTTGTGCTGGCCCCCTCACCTCCCTTGCCAACAAAGGAAATGTAGTAGTCTACTTTCCCCAGGGTCATCTTGAACAGCTTGCTTCTTTCTCTCCTTTCTCGCCCATGGACATGCCCACTTATGACCTTCAACCGCAAATCTTCTGCAGGGTCGTCAATGTCCAGCTTCTTCGTATTTGTTATTTCCCGGAACAGGCCAACAAGGAGAATGACGAGGTTTACACGCAAGTTACTCTGTTTCCCCAGGCAGAGTTGGCAGCGGTGCACTTGGAGGGCCAAGAACTTGAGAAATTGGGAGCATTTCAGGAGGAAAATGGAGGATTACCTGCAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCTTCAGACACTAGCACTCACGGGGGTTTCTCTGTTCCTCGCAGAGCTGCTGAAGATTGCTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCCCAGGAGCTTGTTGCAAAAGACCTGCATGGAGTAGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGACGGCATCTGCTCACAACTGGCTGGAGTATTTTTGTCAGCCAAAAGAATCTTGTATCTGGCGATGCAGTACTCTTTCTGAGGGGTGAAAGCGGAGAACTGAGATTGGGAATCAGAAGATCTGTTCGACCTAGAAATGGTCTTCCCGAGTCAATTATTGGTGATCAGAATTGCTATCCCAATTTCCTATCTTCAGTGGCTAATGCTATATCCACCAAAAGTGTGTTTCATGTTTTCTACAGCCCAAGGGCAAGTCATGCGGAGTTTGTTGTCCCCTACCAGAAATATGTCAAAAGCATCAAGAATCCAATGACCATTGGAACAAGATTTAAGATGAAATTCGAAATGGATGAATCTCCCGAAAGAAGGTGTAATGGTGGTATAGTGACGGGAATGCGTGATTTGGATCCCTATAGATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTAAAATGGGATGAGGATTTTGCTACTAATCATCAAGATCGAATTTCTCCATGGGAGATTGAGCCTTCCGTTTCTCTCCCCCCCTTGAGCATTCAGTCATCCCCAAGACTAAAGAAATTGCGGACAGGTCTGCATGCTGCCCCATCAAGTCACCTCATGACCGGTGGCGGTGCATTTATGGACTTTGAGGAGTCTGTAATATCACCTAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGCATCATACTATTTTGGGCGTGATGCAGTGACCAACCAGCCAGATTTTGAGATGAGTCCTCTTAGTCATCCAAATCTTGCATCCAATGGATTAAGAAAGGCTACTGCTGCTGAACTTACGAGGGTTCACCCTTCAAGTTATGCAGGCTTTGCAGAGACTAATAGGTTTCTGAGGGTCTTGCAAGGTCAAGAAATAGGTCCACTGCAATCCCTGAAAGGAAAGGCTGATTTTAACCTTGGGGCATGGGGTAAACCCAATGCCAGTTGCACAACTTTCAACCAGCGTCAGGCATGCAAATCCAACTTCAATACTTCTGGATCAAAAGGCCTTATAACTTCTAATTTCCCTTACGGTGACATTCACCGAGCTGGTCAAAGTAGCTTGTTGAGCTCTAAACCTGCAAATTTCCAGATAGAGAATGTCCACACTCCTTCCACTCAGGCAGAGCTCTCAACAAAGGAAGTTGGACGCTCGGATCTGTCAAACAAGGATAAGCTACAGGATAGTTTTTCTACTGCTGCTTCTTTAGGAGCAAGTCTAAGGATTCCAAGTGATGAAAATTTTGAGGGAAAGGTAAATGGCTGTAAACTATTTGGATTTCCCTTATCTGGAGAAGGCAACTCTCAGAATTTACAGAACTCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTGAACAGCTACAATGATTTGTTGAGTGAACTAGAGCGACTGTTTGGCATGGAAGGCCTTATAAAGGATCCTGATAAAGGATGGAGGGTCCTGTACACCGATAGTGAAAATGACATAATGGTTGTAGGGGATGACCCATGGCATGAGTTCTGCAGTGTGGTGTCTAAGATCCATATATATACCGAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCACTGATGATACCCAGAGCTGTTTGGAACAGGCACCAGGAGTGACGGAGGCTTCCAAGTCCTCATCTGTGGGCCAGCCAGATTCTTCTCCAACAGAAGTGTAG 2415 0.4563 MEIDLNHAVTEVEKNAFCAGHCEQGACASCFASSTSSSSNSPSPRVSSSYLELWHACAGPLTSLANKGNVVVYFPQGHLEQLASFSPFSPMDMPTYDLQPQIFCRVVNVQLLRICYFPEQANKENDEVYTQVTLFPQAELAAVHLEGQELEKLGAFQEENGGLPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRSVRPRNGLPESIIGDQNCYPNFLSSVANAISTKSVFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMKFEMDESPERRCNGGIVTGMRDLDPYRWPKSKWRCLMVKWDEDFATNHQDRISPWEIEPSVSLPPLSIQSSPRLKKLRTGLHAAPSSHLMTGGGAFMDFEESVISPKVLQGQENTGFASYYFGRDAVTNQPDFEMSPLSHPNLASNGLRKATAAELTRVHPSSYAGFAETNRFLRVLQGQEIGPLQSLKGKADFNLGAWGKPNASCTTFNQRQACKSNFNTSGSKGLITSNFPYGDIHRAGQSSLLSSKPANFQIENVHTPSTQAELSTKEVGRSDLSNKDKLQDSFSTAASLGASLRIPSDENFEGKVNGCKLFGFPLSGEGNSQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYNDLLSELERLFGMEGLIKDPDKGWRVLYTDSENDIMVVGDDPWHEFCSVVSKIHIYTEEEVEKMTIGMITDDTQSCLEQAPGVTEASKSSSVGQPDSSPTEV 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00048 804 Pfam AUX/IAA family 671 762 IPR033389 -
Pral4402g00048 804 SUPERFAMILY DNA-binding pseudobarrel domain 164 279 IPR015300 -
Pral4402g00048 804 Gene3D - 336 408 - -
Pral4402g00048 804 MobiDBLite consensus disorder prediction 781 804 - -
Pral4402g00048 804 CDD B3_DNA 170 272 IPR003340 GO:0003677
Pral4402g00048 804 ProSiteProfiles B3 DNA-binding domain profile. 172 274 IPR003340 GO:0003677
Pral4402g00048 804 Gene3D - 674 767 - -
Pral4402g00048 804 Pfam Auxin response factor 298 380 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4402g00048 804 SUPERFAMILY CAD & PB1 domains 680 757 - -
Pral4402g00048 804 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 22 30 IPR006058 GO:0051537
Pral4402g00048 804 FunFam Auxin response factor 673 767 - -
Pral4402g00048 804 FunFam Auxin response factor 335 408 - -
Pral4402g00048 804 Pfam B3 DNA binding domain 172 273 IPR003340 GO:0003677
Pral4402g00048 804 MobiDBLite consensus disorder prediction 604 624 - -
Pral4402g00048 804 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 767 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4402g00048 804 Gene3D - 170 274 IPR015300 -
Pral4402g00048 804 ProSiteProfiles PB1 domain profile. 678 760 IPR000270 GO:0005515
Pral4402g00048 804 SMART B3_2 172 274 IPR003340 GO:0003677
Pral4402g00048 804 FunFam Auxin response factor 170 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00048 Pral-Chr4402 209452 215836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00048 47 802 B3 DNA Binding Superfamily AT5G60450 60.499 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4402g00048 AUX_IAA 2.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00048 - - gmx:100812909 1214.52