Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00045 ATGGAAGGAGGATATCAAAGTGGGTCTAAGTTTCCGCCAGGATTCAGGTTCCATCCTTCTGATGAAGAACTCATAATTCATTACTTACAAAATAAAATCACGTCTCGTCCACTTCCAGCATTGATTATTGCAGAAATTGATCTGTACAAGTACAACCCATGGGAGTTACCCAAAAAGGCATTTTTTGGGGAGGATGAATGGTATTTCTTTAGCCCTAGAGACCGAAAGTACCCAAATGGATTAAGACCAAACAGAGCAGCGGCTTCAGGATATTGGAAGGCCACTGGTACGGACAGGCCTATACTTGGCTCTTGCGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTTTTTTACACAGGTCGCCCTCCCAGAGGGGCTAAGACAGATTGGATTATGAATGAATACAGATTAGTTGACACAACCAGCAAACCTTCCAGGTCTAAAGGCTCCATGCGACTGGATGACTGGGTGTTGTGTCGGGTTCGACACAAAGGATGCTCATGGAAGAGTTCTGGTGAGAATCAGGAGCATCATTGTGAACCAATTTTGCAGGCAAACCTTCCATGCTGCGAGCAATTCCCAGGAAACACAAACCTTGACACTAACATCTTCACAGATTATCAATACAAAGACTATCGGATCTTAGCCTCCATTCTGGTGGGCGAGCCTATACTTCCCATAGGTAACAAGTCAAGTATGAGCTTTAAAGGCAGCAAAGGCGACGACCTCAGTTCAGTGCGCCGCTACCTCGACAACTTGAGTACAAAATCTATTGAAGATAATCAATACGAGAATCTCATTTCTTTTAACAATGCCCTTCATATTGAGAACAAAATAGATCATTTTACTGGCAAGGCGCTGCTGAGTAGTGACATGTACTGCTGTAGTCGAAATTGGTCTCAAGATGGCATCCTCAATTAG 924 0.4394 MEGGYQSGSKFPPGFRFHPSDEELIIHYLQNKITSRPLPALIIAEIDLYKYNPWELPKKAFFGEDEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDRPILGSCGSKRIGVKKALVFYTGRPPRGAKTDWIMNEYRLVDTTSKPSRSKGSMRLDDWVLCRVRHKGCSWKSSGENQEHHCEPILQANLPCCEQFPGNTNLDTNIFTDYQYKDYRILASILVGEPILPIGNKSSMSFKGSKGDDLSSVRRYLDNLSTKSIEDNQYENLISFNNALHIENKIDHFTGKALLSSDMYCCSRNWSQDGILN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00045 307 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Pral4402g00045 307 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
Pral4402g00045 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 232 - -
Pral4402g00045 307 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Pral4402g00045 307 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Pral4402g00045 307 FunFam NAC domain-containing protein 72-like 20 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00045 Pral-Chr4402 189311 191085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00045 11 174 NAC Transcription Factor Family AT1G61110 66.860 2.41e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4402g00045 NAM 7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00045 - - gmx:100817193 422.55