Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00044 ATGATGCCTGCAGATTCCCTTTCTGTTCCTTCCACCGTTAACACCTTCGTCGACCCAAATTCCAACCCTAACCCTAATTCAAATCCAGTCAAGAAAAGGAGAAATCTCCCCGGAACACCAGATCCAGATGCAGAAGTGATAGCACTATCGCCGAAGTCCCTCATGGCGACGAACCGCTTCGTGTGCGAAATCTGCAATAAGGGCTTCCAGAGAGACCAGAACTTGCAGCTGCACCGCCGCGGCCACAATCTTCCGTGGAAGCTCCGCCAGAGAACCAACAAAGAAGTGAGGAAGAAGGTTTATGTATGCCCTGAGAAGACCTGCGTGCACCACGATCCCTCCAGAGCCCTCGGAGACCTCACCGGGATCAAAAAACACTTCAGTAGAAAGCACGGGGAGAAAAAGTGGAAGTGCGAAAAATGCTCCAAGAAGTACGCGGTTCAATCCGATTGGAAAGCCCATAGCAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGTGGCACCATTTTCTCCAGGAAGGACAGCTTCATAACTCACAGAGCTTTCTGTGACGCCTTGGCCGAAGAAAGTGCGCGAACAATAACGACAGTACCCTCAGCATTTACTAACATGAGAAGTGACCATTTGATGAGCATCAATCACCACCAAGCACCACGAATAATCCCTGAGATATTTCCAGGGTTCCATCCAGAATTTGGAGGTTCCGAAGGAGCATTGGGGAACTTTGGTCAGCTCAATCAACAGCTCAGCGTAGGAAGCAACAATTTGAATTCCCGCTTTCCGGATTTAGTTCAAGGGATGGACATGTTTGGGACATCAACGCATCAGACACAGTGGGTTAGCCGATACCCAGAAGCAGAATCATCAATTACAAGTGCCAACAACATGTGTGTGTCTGGAATGGTGCCACATGGACTGAAGCAAGAACCAGAAGAAAACAAAGTAGAGTTGTCGCATAGCATAGGCGCTCTGTACTCCTGTCATCAGATTCAGAACCCACAAGCTGGAGGAGCAAGTCACATGTCAGCCACTGCACTCTTACAGAAAGCGGCACAGATAGGATCTACGACCCCCAACAATGTCAACACATCCTCCTTCAACTCTATCAACCACTTTGGATTGATGGGCTCAGCTGTTCTAAACTCCTCCAACAACACTAACGTTGACGTTCACAAAATTTTCAAGCAAACGAATAACAAGAGTACCAGCCTTGGAGGTGGGTTTCTGCTAAACGACTCTAATCCAAGGTCGTTTGCGAGCACAGCCAAGGGTTTGCGTTCGAGCTCGAATGAAGAGGAGCTAGGTTTGACCAGAGACTTTCTGGGAGTTGGAGGGGAGTCGATGAGCGGACCCTTTCTGGAGCAAGAGTTAGCCAAGTTCAGTACAATGGGCTCAGCCTCAGCTTCAGCGCCTTGGACCTGA 1425 0.4898 MMPADSLSVPSTVNTFVDPNSNPNPNSNPVKKRRNLPGTPDPDAEVIALSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEESARTITTVPSAFTNMRSDHLMSINHHQAPRIIPEIFPGFHPEFGGSEGALGNFGQLNQQLSVGSNNLNSRFPDLVQGMDMFGTSTHQTQWVSRYPEAESSITSANNMCVSGMVPHGLKQEPEENKVELSHSIGALYSCHQIQNPQAGGASHMSATALLQKAAQIGSTTPNNVNTSSFNSINHFGLMGSAVLNSSNNTNVDVHKIFKQTNNKSTSLGGGFLLNDSNPRSFASTAKGLRSSSNEEELGLTRDFLGVGGESMSGPFLEQELAKFSTMGSASASAPWT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00044 474 SMART c2h2final6 136 156 IPR013087 -
Pral4402g00044 474 SMART c2h2final6 60 82 IPR013087 -
Pral4402g00044 474 SMART c2h2final6 101 131 IPR013087 -
Pral4402g00044 474 MobiDBLite consensus disorder prediction 1 42 - -
Pral4402g00044 474 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Pral4402g00044 474 Gene3D Classic Zinc Finger 114 193 - -
Pral4402g00044 474 FunFam protein indeterminate-domain 12-like 39 107 - -
Pral4402g00044 474 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Pral4402g00044 474 MobiDBLite consensus disorder prediction 7 33 - -
Pral4402g00044 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Pral4402g00044 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 455 IPR031140 -
Pral4402g00044 474 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Pral4402g00044 474 Gene3D Classic Zinc Finger 39 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00044 Pral-Chr4402 179666 182314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00044 30 454 IDZ Gene Family AT3G45260 47.489 3.38e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4402g00044 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00044 K25870 - qsu:112038579 498.819