Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00039 ATGGTTTCCGCCAAAATGTCGAAAACAGAAAAGCAAATCAACAACGGGGGAAGCTCAAAAGTAGCGAGTAAAGCAAGTAAGCCACGAAAAGAGGGATTGGCGAAGAAGAATAAACTCGGCAAGAGCAATTTGAAGGACGATAAAGTATCAATCTTTCCGTCTTCTACCACCGAGTTCTTAGAAGGAGGGAAGGAGCCCGGAGTTCACAACAACGGGGCTACAAATGGGCGAACCAACGGGACCAGACCCAAGAAGGGTAAACGAAAGCAACAAGGTGGCGATTATACAGTTGAAGAGAAAGAAAACGCGAAAATGAATGAGCTTCCGATGAGTCGAATCAAGAGAATAATGAAGGCAGAAGATCCCGATCTACGTGCTTCTGAGGAAGCCATCTTTGTCATCAGCAAAGCTACGGTGAAGTTCCTCAAACAATTTACGCGGGAATCTCATGCTTGTTCAGTTGGGGATCAAAAGAAATTTCTTGGTTACCAGCGCCTGTCCGGTGTTGTTGGCAAGCAGAGGAGATATGACTTTCTTTTAGATTATGTTCCTGAGAAACTAAAAGCTGAGGATGCGTTGAGAAAGAAATGCAAGCAACATTTGGGAAGATCTGAAAATGTACAATAA 627 0.4386 MVSAKMSKTEKQINNGGSSKVASKASKPRKEGLAKKNKLGKSNLKDDKVSIFPSSTTEFLEGGKEPGVHNNGATNGRTNGTRPKKGKRKQQGGDYTVEEKENAKMNELPMSRIKRIMKAEDPDLRASEEAIFVISKATVKFLKQFTRESHACSVGDQKKFLGYQRLSGVVGKQRRYDFLLDYVPEKLKAEDALRKKCKQHLGRSENVQ 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00039 208 Gene3D Histone, subunit A 75 185 IPR009072 GO:0046982
Pral4402g00039 208 MobiDBLite consensus disorder prediction 1 22 - -
Pral4402g00039 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 107 164 IPR003958 -
Pral4402g00039 208 MobiDBLite consensus disorder prediction 1 96 - -
Pral4402g00039 208 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 90 199 - -
Pral4402g00039 208 MobiDBLite consensus disorder prediction 24 45 - -
Pral4402g00039 208 SUPERFAMILY Histone-fold 107 185 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00039 Pral-Chr4402 158473 161037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00039 70 166 CCAAT-HAP5 Transcription Factor Family AT1G07980 33.981 2.09e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pral4402g00039 CBFD_NFYB_HMF 3.3e-10 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00039 - K03506 pcin:129316088 274.248