Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00035 ATGGATTTTTGTAATTGCTTCGGGTTCATCCGAAAATCTAAACAGCAGAGTGCTAAGTTTGGTATCAATAATAATCTCTCTCAGGAGCTATTGTTGGATGAAGACATTGAAGACGAGGGTGGCTCATATGATGGTGAGGTTACTAACATCAGCAGTGGAGATGATGGCGAAGTGCAAATTCATGCCAACCGGTCTGAGGATATTTTGAAACTGAGAGCACAGAGTGACATGATTTGTAGGCAATTTCCTGTGAAGGAAACTCACAAAGTTGTTCGTACAGAGGATGAAAATGGAAACAAGATGATAAATGAGTATGTTCGTGAATATAGGATAGGTGCTGGTAGCTATGGGAAAGTGGTTTTATATCGAAGTTCTGTTGATGGTAAGCACTATGCAATAAAGGTCTTTCACAAGTCTCATTTACTGAAGCTTCGAGTTGCTCCCTCAGAGACTGCCATGACAGATGTTCTGCGTGAGGTACTCATCATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATCACTTTTACATGGTACTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTACAGGACCTCTTTGTCGCTTAGGTGAGGAGACTGCTAGGAGATACGTGCGTGACATTGTTTCAGGATTAACGTATCTACATGCTCATAATATTGTGCATGGGGATATTAAACCTGATAATCTGTTGGTTACTCGCCATGGTACGGTGAAGATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGATAATGATGAACTCCGTCGGTCCCCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTGGGTCTTACCTATCATGGCAAAGCTGCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATACTGGGTGAATATCCATTTCTTGGTGATACTCTTCAAGATACTTACGATAAAATAGTGAATAACCCTTTAGTGCTTCCAGATAGTTTGAACATGCAATTGAAGAACTTGCTAGAAGGACTGCTTTGCAAAGATCCAAAACTAAGGTTGACATTAGGTGATGTTGCGAAGCATAGCTGGGTTATAGGAGACTATGGTCCAATTCCTGAGTACTTGTGTTGCTGTAAACGCAAGAGCTTGGAGAGGAGAGACTTAGATAGGAGCAATATACTTGCTTGA 1194 0.4188 MDFCNCFGFIRKSKQQSAKFGINNNLSQELLLDEDIEDEGGSYDGEVTNISSGDDGEVQIHANRSEDILKLRAQSDMICRQFPVKETHKVVRTEDENGNKMINEYVREYRIGAGSYGKVVLYRSSVDGKHYAIKVFHKSHLLKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGTGPLCRLGEETARRYVRDIVSGLTYLHAHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAFEDDNDELRRSPGTPVFTAPECCLGLTYHGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPDSLNMQLKNLLEGLLCKDPKLRLTLGDVAKHSWVIGDYGPIPEYLCCCKRKSLERRDLDRSNILA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00035 397 FunFam Serine/threonine-protein kinase GRIK2 95 394 - -
Pral4402g00035 397 Pfam Protein kinase domain 105 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4402g00035 397 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Pral4402g00035 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Pral4402g00035 397 SUPERFAMILY Protein kinase-like (PK-like) 101 378 IPR011009 -
Pral4402g00035 397 CDD STKc_LKB1_CaMKK 111 366 - -
Pral4402g00035 397 Gene3D Phosphorylase Kinase; domain 1 99 201 - -
Pral4402g00035 397 FunFam Serine/threonine-protein kinase Ssp1 99 201 - -
Pral4402g00035 397 Gene3D Transferase(Phosphotransferase) domain 1 205 371 - -
Pral4402g00035 397 ProSiteProfiles Protein kinase domain profile. 105 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4402g00035 397 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 64 370 - -
Pral4402g00035 397 SMART serkin_6 105 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00035 Pral-Chr4402 148262 154138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00035 111 373 CBL-interacting serine-threonine protein kinases AT5G35410 34.601 1.27e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Pral4402g00035 Pkinase 4.1e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00035 K00908 - gmx:100776013 639.417