Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00017 ATGAGGGAAGTTGAGAAGAGGTTGGATCCGCAACTCTGGCACGCTTGCGCCGGAGGTATGGTTCAAATGCCTCCGGTGAACTCCAAAGTTTTTTACTTTCCCCAAGGCCACGCCGAGCACGCTCAGGCCAACCTTAATTTTCCCCCTTCCTTAAGGATTCCGCCGCTTATTCTTTGTCATGTGGTATCGGTGAAATTCTTGGCCGACCCAGAAACTGATGAAGTTTTTGCTAAGATAAGGTTGGTTCCTGTGAGAAATTCCGAGCTCGATTACGACGACGACGGTGTTACGGATGGTAAGGGATCGGAGAATTCAGAAAAACCAGCATCTTTTGCGAAAACATTAACCCAATCTGATGCGAACAATGGTGGGGGCTTCTCTGTTCCAAGGTATTGCGCAGAAACCATCTTCCCACGGCTGGATTACTCTGCCGAGCCACCCGTCCAAACTGTGGCTGCCAAGGACGTTCATGGCGAAACTTGGAATTTCAGACATATATACAGGGGAACACCTCGTCGGCACTTACTAACCACTGGGTGGAGCACTTTCGTGAACCAAAAGAAACTTGTTGCTGGGGATTCTATTGTTTTTTTGAGGGCTGAAAACGGCGAACTCTGTGTCGGAATTCGCCGAGCAAAACGCGGTGGTTTTGGCAGCCGGATGCAAACCCCATCCGCTGGCTGGCGTGGTAGTGCCGGAAGTGGTGTGGGCCCTTGTGGGGGCTTCTCTTATTTCTTGAGGGAGGAGAACAAATTACTGCCTAATGCTTGTGGGAATTCAAGCCCTGGAAGAGCAAACGTGAGGCCTGAATCTGTGATGGAGGCTATGACACTGGCCGCTAGTGGTCAGGCATTTGAAGTAGTTTATTATCCTCGAGCTAGTACTCCAGAGTTTTGTGTTAAAGCTGCATCTGTGAGAGCTGCAATGAGAACCCAATGGTGCTGTAGCATGAGGTTCAAGATGGCCTTTGAGACCGAGGATTCTTCTAGAATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTCGATCCCGTGCGTTGGCCCAACTCCCCCTGGCGACTTCTTCAGGTTACTTGGGATGAACCAGGTCTGCTGCAGAATGTGAAGCGCGTTAGCCCATGGTTAGTAGAATTGGTATCAAACATGCCAGTCATTCATTTCACACCTTTTTCTGCGCCAAGGAAGAAGCTGCGGCTTCCACAACACTCGGACTTCCCCTTTGATGGTCAATTTCAAATACCGACATTTTCAGGCAACCCCCTTGGGCCTAGCAGCCCCTCGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTTTTTCAGATCTCCACCTTAACAATAAAGTGCAGTTGGGGTTGCTTCCAACTAACATCCAGCAGCTTGATATACATCCTGGAATGTCCAATGGCAAGATGGCAAACAATGGCGGGAACAATGAAAGCTTGTCTTGCTTGCTAACCGTGGGAAATTCTTGTAAGAGTTTAGAGAAATCTGATAATGTGAAGAGACACCGGTTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTCGAAGCTGTTCTAGTGATAAGTTGTCTCAGAGTGTTACTGAAAAAGATTTGCCAGCCGAAAACAGAGACAAGACAAGGTGCAAATTGGGTGATTCGCAAGCTGGTCTTTCTCCGCAGTTTTCACCTGGGAAATCTTCTAATGTTGAGTATTCTTGGCAACTAGGCTTGGATAATGGTCATTGCAAGGTTTTCATGGAATCTGAAGATGTGGGACGGACCCTTGACCTGTCGTGTCTTGGTTCTTATGAAGAGCTGTACAGAAGACTGGCCAACATGTTTGGAATTGAAAGATCTACAATGTTGCGCCATGTACTCTACTATGATGCATCGGGTGCTGTTAAGCAAACTGGATTAGAACCCTTCAGTGACTTCATGAAAACGGCAAAAAGATTGACAATTCTGACCAATTCAGCCAGCAAAGAGTTTTAA 2025 0.4736 MREVEKRLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQANLNFPPSLRIPPLILCHVVSVKFLADPETDEVFAKIRLVPVRNSELDYDDDGVTDGKGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVAAKDVHGETWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGELCVGIRRAKRGGFGSRMQTPSAGWRGSAGSGVGPCGGFSYFLREENKLLPNACGNSSPGRANVRPESVMEAMTLAASGQAFEVVYYPRASTPEFCVKAASVRAAMRTQWCCSMRFKMAFETEDSSRISWFMGTIASVQVVDPVRWPNSPWRLLQVTWDEPGLLQNVKRVSPWLVELVSNMPVIHFTPFSAPRKKLRLPQHSDFPFDGQFQIPTFSGNPLGPSSPSCCLSDNAPAGIQGARHAQFGISFSDLHLNNKVQLGLLPTNIQQLDIHPGMSNGKMANNGGNNESLSCLLTVGNSCKSLEKSDNVKRHRFLLFGQPILTEQQISRSCSSDKLSQSVTEKDLPAENRDKTRCKLGDSQAGLSPQFSPGKSSNVEYSWQLGLDNGHCKVFMESEDVGRTLDLSCLGSYEELYRRLANMFGIERSTMLRHVLYYDASGAVKQTGLEPFSDFMKTAKRLTILTNSASKEF 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00017 674 SMART B3_2 111 213 IPR003340 GO:0003677
Pral4402g00017 674 Gene3D - 109 213 IPR015300 -
Pral4402g00017 674 FunFam Auxin response factor 313 386 - -
Pral4402g00017 674 ProSiteProfiles PB1 domain profile. 590 668 IPR000270 GO:0005515
Pral4402g00017 674 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4402g00017 674 MobiDBLite consensus disorder prediction 90 109 - -
Pral4402g00017 674 FunFam Auxin response factor 109 213 - -
Pral4402g00017 674 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Pral4402g00017 674 Gene3D - 313 385 - -
Pral4402g00017 674 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Pral4402g00017 674 Gene3D - 589 674 - -
Pral4402g00017 674 CDD B3_DNA 110 211 IPR003340 GO:0003677
Pral4402g00017 674 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4402g00017 674 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00017 Pral-Chr4402 73782 77795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00017 4 672 B3 DNA Binding Superfamily AT4G30080 58.370 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4402g00017 B3 4.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00017 - - pcin:129315672 1226.85