Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4402g00015 ATGTCAGAGGACATTACAAATATGAAGGATCCTTTGTTTTTGGACAAGAGTTTCAATGGTATATCGGATGAAATCTTCGACGATGTCATAAAATTCTTTGATTTCCCGCTCGACGATGTGGAAGCTAATATTGCGGAAGAAGAAGATTGGGATGCTCAATTTAAACGCATTGAAGAGCCATCTTTTGATGTGTTCTCAGTGTCATCATCTGAATTGTGCGGTAAAACTCAAAACAATTTACACCTTGGGAGGACTTTCTCTACTCGTAAGGAGATTTCTCATGTAAAACAAATGGCAGAGGCTGCTAAGCCTAACGTCTACCTCAATAAAAAGGATCAGCCCCAGTTCCGAACCTACAGCCCAGTTTCTGTATTTGAAAGCACTACATCTTCCTCTGGTGAGAGTTCCAACTTTGATCTACCCGTCATCCCAAGGAAGCGCCCTCGAGGGAGGCGCCAGCGCCTGTCCAGCTTTGCCTCTCTATTGTCGATCCCGTTCACCTCTACATCACTGGCATTGCGAAAATCACGGAAGGGAGTTGCTGCAGGACAGTTATTAAATGGGGTGAAAAGGAAGCAGAGGAAGAAGGATTTCTCCATTCTCTCAAGTGATGTCAAGAGGAACGGATCATCATTAGGAGATTCAGGTGCCCCTAGAAAATGCATGCATTGTGAAACGATGAAGACCCCACAGTGGAGGGAGGGACCTATGGGTCCAAAGACTCTCTGTAATGCATGTGGGGTTCGATACAGGTCAGGTCGCCTGTTCCCTGAATACCGCCCTGCAGCTAGTCCCACTTTTGTACCATCTCTGCATTCCAATTCTCACAAGAAGGTCATAGAGATGAGAAACTCGGCCATGCAAGAGGCTAGGGCTTCTATTTTGGGTTTGTCATCGAATTAA 903 0.4551 MSEDITNMKDPLFLDKSFNGISDEIFDDVIKFFDFPLDDVEANIAEEEDWDAQFKRIEEPSFDVFSVSSSELCGKTQNNLHLGRTFSTRKEISHVKQMAEAAKPNVYLNKKDQPQFRTYSPVSVFESTTSSSGESSNFDLPVIPRKRPRGRRQRLSSFASLLSIPFTSTSLALRKSRKGVAAGQLLNGVKRKQRKKDFSILSSDVKRNGSSLGDSGAPRKCMHCETMKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHKKVIEMRNSAMQEARASILGLSSN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4402g00015 300 Gene3D - 213 292 IPR013088 GO:0006355|GO:0008270
Pral4402g00015 300 CDD ZnF_GATA 220 267 IPR000679 GO:0006355|GO:0043565
Pral4402g00015 300 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Pral4402g00015 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 278 - -
Pral4402g00015 300 ProSiteProfiles GATA-type zinc finger domain profile. 215 251 IPR000679 GO:0006355|GO:0043565
Pral4402g00015 300 PANTHER GATA TRANSCRIPTION FACTOR 42 287 - -
Pral4402g00015 300 SMART GATA_3 215 265 IPR000679 GO:0006355|GO:0043565
Pral4402g00015 300 FunFam GATA transcription factor 212 294 - -
Pral4402g00015 300 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4402g00015 Pral-Chr4402 64934 69241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4402g00015 18 295 C2C2-Gata Transcription Factor Family AT1G08010 38.225 1.55e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral4402g00015 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4402g00015 - - gmx:100813303 327.791