Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4401g00006 ATGAGCAGTCTAAGGCCAGAATCGCATGTAGCACAACAGATTCGGCGTGACAAGTTGAGATTCCAGAATAGTTCCCAGCATTTACAAGATTTCCCGACTAATATTGAACAATTGTCACTACACGCGGGCTTAAACTCGGATTTTCTGCAAGTTAGGAGTGTGAGAAATGCAAACATGCTTTACGAACCAGCTTTTTATTCATCGGAAATTGCTAGTTTTTCAACACCTTTGAATGCTTTATCTGCTGGAGGCGAAGTCAAACCTAGTAGACTAATGTTGTCCCACTATGCTTCATTGCCCCATACATCTGTATCGGAACCAGCACCGTCGCCAGCCGACCAACCCCGAGACAACTTGGGTCATGATTGGATGATTAATTACGGAAGTAGTTCCGGGGTAAACGAAACTAATAATCCCAACTCTAATTTTGCGACTGAGCTGAATAATAACTACGCGTCTGTGTATCAGCACTTGGTGAAGCCTAGTTACAGCGAACTCATCGGAAGGCAGTTAGGGGAAATGCATCATCCTTCTTCTCCTCCTCCACTTCCTCAGAATACTTTGCACGATATCGTCAAGTCCGCTTCTATCAGTGCCCAAGGATCCGATCATATAGTACCGCAGATGGAACATCCTGGCCATGGGATCTGGATAGGAAATCAAAATCAGTCAAGTCAGTTTCATTTCGGAAATACAAATTTGAGCGATCCCATGAATCCTCAGGGATTATCTTTATCACTCTCATCAAATTCCCATTCCAAGACTGCTATTTCTGGGTTCCCATGCAATGGTGGACATGGATCAGACGAACTCTACTCACGATGTGATAAATCTGCGAAATCTGTTATGAAGCCCTCCTCCTTCGTAACTAAAGATTGCGGAAAATCACTCCAAGACGTCGTGGGAGTAGCTTCGAGCACTAGCAGTTATCGAAGTAATGTGGGCCCGCTTGGGCCTTTCACTGGATATGCAACCATTTTGAAGAGTTCGAGATTCTTAAAGCCAGCTCAAGAGCTGTTGGATGAGTTCTGTAATATGTGTGGATCTAACATTATTATTAAAGGACCTGATGGTTCAGATTTATCGAGGGTGTCTGGAGAAGTCAGTACTACTTCTGCAGCTAATGCAACTGAAATTGTTAGTGCAAAAGTTAGCCTTGGTAACGCAGGTGCTGCTTCGTGTTCTATTTTGTATAATTCCAAGGAAAATAGCGGTGATTGTGAATCAAGAGGAAACTTTGATTATTCTTCTCGGTCGGCGTATCAACAAAAAAAGGCGAAGCTGCTGTACATGCAAGAGGAGGTCACGAGAAAATGCAGGCAATATCACCAGCAAATGCAAATGGTTATTTCATCTTTCGAGTCAGTAGCAGGTCTTAGTTCGGCTGCCCCTTATATCGCTATGGCTCTCAAGTCAGTAGCAAGACACTTCAGGGGCCTGAATAAGGCTATCTCAGAACAGATCAAGCATTTGAGAGAGGCGTTGGGGGAAGATTTGTCAGGATCCACGTCTGGTACAGTTAGTAAACTTGACACAGGGCTAACATATCTGGACCAGAGCTTTCAGAAGAACAAAACTGCATTTCTTGAACATCCACAAGTATGGAGGCCTCAGAGAGGCTTGCCGGAACGCGCAGTCGCGATTCTTAAAGCTTGGTTATTTGAGCATTTCCTTCACCCGTACCCCACGGATACTGATAAACACATGCTGGCTACACAAACTGGCCTATCTCGAAACCAGGTATCGAATTGGTTCATAAATGCTCGAGTCCGTGTGTGGAAGCCAATGGTTGAGGAAATACACAATCTTGAAACGAAAGGCATCGCCGGTGGCAACCAGAACGAGGGAACATCTGGTGCAGAAAGAAGCAGTCAACAAACTATGGTTGAAGAAGCCCTTGGCAAGTTTGGTAGGCACGGAGACGTAGTACCGGAGAAGCAGTTCCAGTGTTTGGGAATGAGTTCCTTAGGTGGGAATTCGGAGGGAATGGGTTTTATGGGTTCAGAGCAATGGAATCAAGAGAAGAGGTCCAAATTGGAATATCAGATTACGCCAAACATGGATGGGACATTAATGGGTTCTGTACCCTACAGGCGCGGTGCAGGCCTCGATGTGGGGGGACTTGGTTCTGTGTCATTAACATTGGGTCTTAGACATGGGGTTGAAGGCGTACAGCGGCAGCAGCAGCAACAATTACACCAGGAGGACCAGATTAGACGTCACTTTGGAGAGCATATGATCCATGACTTTGTGGGTTAG 2259 0.4533 MSSLRPESHVAQQIRRDKLRFQNSSQHLQDFPTNIEQLSLHAGLNSDFLQVRSVRNANMLYEPAFYSSEIASFSTPLNALSAGGEVKPSRLMLSHYASLPHTSVSEPAPSPADQPRDNLGHDWMINYGSSSGVNETNNPNSNFATELNNNYASVYQHLVKPSYSELIGRQLGEMHHPSSPPPLPQNTLHDIVKSASISAQGSDHIVPQMEHPGHGIWIGNQNQSSQFHFGNTNLSDPMNPQGLSLSLSSNSHSKTAISGFPCNGGHGSDELYSRCDKSAKSVMKPSSFVTKDCGKSLQDVVGVASSTSSYRSNVGPLGPFTGYATILKSSRFLKPAQELLDEFCNMCGSNIIIKGPDGSDLSRVSGEVSTTSAANATEIVSAKVSLGNAGAASCSILYNSKENSGDCESRGNFDYSSRSAYQQKKAKLLYMQEEVTRKCRQYHQQMQMVISSFESVAGLSSAAPYIAMALKSVARHFRGLNKAISEQIKHLREALGEDLSGSTSGTVSKLDTGLTYLDQSFQKNKTAFLEHPQVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHNLETKGIAGGNQNEGTSGAERSSQQTMVEEALGKFGRHGDVVPEKQFQCLGMSSLGGNSEGMGFMGSEQWNQEKRSKLEYQITPNMDGTLMGSVPYRRGAGLDVGGLGSVSLTLGLRHGVEGVQRQQQQQLHQEDQIRRHFGEHMIHDFVG 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4401g00006 752 CDD homeodomain 535 596 IPR001356 GO:0003677
Pral4401g00006 752 Gene3D - 538 600 - -
Pral4401g00006 752 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 228 621 - -
Pral4401g00006 752 SMART prehox3 321 486 IPR006563 -
Pral4401g00006 752 SMART HOX_1 535 599 IPR001356 GO:0003677
Pral4401g00006 752 Pfam Associated with HOX 326 485 IPR006563 -
Pral4401g00006 752 SUPERFAMILY Homeodomain-like 537 602 IPR009057 -
Pral4401g00006 752 ProSiteProfiles 'Homeobox' domain profile. 532 595 IPR001356 GO:0003677
Pral4401g00006 752 FunFam BEL1-like homeodomain protein 9 538 600 - -
Pral4401g00006 752 Pfam Homeobox KN domain 552 591 IPR008422 GO:0003677|GO:0006355
Pral4401g00006 752 MobiDBLite consensus disorder prediction 607 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4401g00006 Pral-Chr4401 21027 27613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4401g00006 416 719 Homeobox Transcription Factor Family AT4G34610 44.444 1.92e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pral4401g00006 POX 3.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4401g00006 - - gmx:100790583 679.863