Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4400g00028 ATGGGAAAGGCTTCTCTGGTCTTCGTTGCATTTCTTATCTCCTTCGCCTTAACGGTCGATGTTAGAATCACGGGGGTTTACCCTGGGGATCCTTGGCTGCAGAGTGCTCATGCTCCCTTCTGTGGAGGCACTGATGCCTCTGGCACTATGGGTGGAGCTTGCGAACACGGTGACATATACAGCCACGGGTATGGCGGCAACACGGAGGCGCTGAGCACGGCACTATTCGACTTTGGGCTGGGCTGCGGCTCGTGCTACGAGGTAAAGTGCGCAAATGACTCGCAACGGTGTTACTCTTGGAGCCTCTCCATATTCGTCGCGGCCACTAACTTCCGCTATGCTCTTCGGAACCACAGTAGCCGCAAGGCACCCTCAGCTGAAACAGGCGTTAAAACTGGCACTCAAACGCAGTATTGGTGGGGACAGTCATGGTCGTTTACGGTGACGGGCAATGACGGACGCACGTCCACCTCTTGCAACATCGTGCACTGGCAATTCAGTCAAACTTTCACTGCCCGGATCTTCGAGGTTTGA 534 0.5487 MGKASLVFVAFLISFALTVDVRITGVYPGDPWLQSAHAPFCGGTDASGTMGGACEHGDIYSHGYGGNTEALSTALFDFGLGCGSCYEVKCANDSQRCYSWSLSIFVAATNFRYALRNHSSRKAPSAETGVKTGTQTQYWWGQSWSFTVTGNDGRTSTSCNIVHWQFSQTFTARIFEV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4400g00028 177 PANTHER EXPANSIN-A15 12 111 IPR002963 GO:0009664
Pral4400g00028 177 SMART dpbb_1 68 138 IPR007112 -
Pral4400g00028 177 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Pral4400g00028 177 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Pral4400g00028 177 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Pral4400g00028 177 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 177 IPR007112 -
Pral4400g00028 177 Gene3D - 24 176 IPR036908 -
Pral4400g00028 177 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Pral4400g00028 177 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Pral4400g00028 177 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Pral4400g00028 177 SUPERFAMILY Barwin-like endoglucanases 26 113 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4400g00028 Pral-Chr4400 115474 116096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4400g00028 3 177 Expansin Gene Family AT2G39700 36.047 9.04e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4400g00028 - - nnu:104597175 147.132