Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4400g00027 ATGGGAAAGGCTTCTCTGGTCTTCGTTGCATTTCTTATCTCCTTCGCCTTAACGGTCGATGTTAGAATCACTGGGGTTTACCCTGGGGATCCTTGGCAGAGTGCTCATGCTACCTTCTGTGGAGGAACTGATGCCTCTGGCGCTACGGGTGGAGCTTGTGGACACGGTAACATATACAGCCACGGGTACGGCGGCAACACGGTGGCGCTGAGCACGGCACTATTCGACTTTGGGCTGGGCTGTGGAGCGTGCTTCGAGATAAAGTGCGCAAATGGCCCGCAATGGTGTCACTCTGGGAGCCTATCCATCTTCGTCGAGGCCACTAACTTCCGCTACGCTCTTCCGGGAGACAATAGCGGCAAGCCACCCTCAGCTGAAACAGGCGTCAAAACTGGCACTCGAACGCAGTATTGGTGGGGACAGTCATGGTCGTTTACTGTCACTGGCAATGACGATGAGGTTGTGCACTGGCAGTTCAGTCAAACTTTCACTGCCCGGATCTTCCAGGTTTGA 513 0.5458 MGKASLVFVAFLISFALTVDVRITGVYPGDPWQSAHATFCGGTDASGATGGACGHGNIYSHGYGGNTVALSTALFDFGLGCGACFEIKCANGPQWCHSGSLSIFVEATNFRYALPGDNSGKPPSAETGVKTGTRTQYWWGQSWSFTVTGNDDEVVHWQFSQTFTARIFQV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4400g00027 170 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Pral4400g00027 170 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Pral4400g00027 170 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Pral4400g00027 170 SUPERFAMILY Barwin-like endoglucanases 23 112 IPR036908 -
Pral4400g00027 170 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Pral4400g00027 170 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Pral4400g00027 170 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Pral4400g00027 170 SMART dpbb_1 67 159 IPR007112 -
Pral4400g00027 170 PANTHER EXPANSIN-A15 11 123 IPR002963 GO:0009664
Pral4400g00027 170 Gene3D - 22 168 IPR036908 -
Pral4400g00027 170 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 110 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4400g00027 Pral-Chr4400 107902 108503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4400g00027 3 123 Expansin Gene Family AT2G39700 61.111 6.13e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4400g00027 - - nnu:104597175 171.785