Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4400g00013 ATGGGAAAGGTTCCTCTGGTTTTCTTTGCATTCCTTATCTCTTTCGCCTTAACCGTCGATGTTAGAATCACAGGGGTTTACCCGGGGGTTCCTTGGCAGCATGCTCATGCTACCTTCTACAGGGGAGCTGATGCCTCTGATGGTACCATGGGTGGAGCTCGCGGTTACCGTAATCCCCACGGGCAAGGGTATGGCGCCAACACGGCGGCGCTGAGCACCGCAATATTCAACATTGGGCTGAGCTGCGGCGTCTGCTTTGAGTTAAAGTGCGCAAATGACCCGCAATGGTGTCACTTCGGCAGCCTATCCATCTTCGTCACGGCCACTAAGTTCCGCGACGCTCTTCCGAACAAAAGTAGCGACAAGCCACCCTCACCTGAAACAGGGGTCAAAACTGGCACTCAAACGCAGTATCGGTGGGGACAGTCATGGTCGTTTACGGTCAAGGGAAATGACGGACGCACGTCCACCTCTTGCAACATCGTGCACTGGCAATTCAGTCAAACTTTCAGTGCCAAGATCATCCAGGTTTGA 534 0.5356 MGKVPLVFFAFLISFALTVDVRITGVYPGVPWQHAHATFYRGADASDGTMGGARGYRNPHGQGYGANTAALSTAIFNIGLSCGVCFELKCANDPQWCHFGSLSIFVTATKFRDALPNKSSDKPPSPETGVKTGTQTQYRWGQSWSFTVKGNDGRTSTSCNIVHWQFSQTFSAKIIQV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4400g00013 177 PANTHER EXPANSIN-A15 15 113 IPR002963 GO:0009664
Pral4400g00013 177 SUPERFAMILY Barwin-like endoglucanases 10 116 IPR036908 -
Pral4400g00013 177 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 111 IPR007112 -
Pral4400g00013 177 SMART dpbb_1 68 150 IPR007112 -
Pral4400g00013 177 MobiDBLite consensus disorder prediction 115 134 - -
Pral4400g00013 177 Gene3D - 26 176 IPR036908 -
Pral4400g00013 177 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Pral4400g00013 177 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Pral4400g00013 177 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Pral4400g00013 177 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Pral4400g00013 177 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Pral4400g00013 177 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4400g00013 Pral-Chr4400 81663 82312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4400g00013 3 111 Expansin Gene Family AT2G39700 66.055 2.73e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4400g00013 - - nnu:104597175 162.155