Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4399g00003 ATGCCTTCATTACGTTCCTTCTTCTCTCCCCCATTCTTTTACCCCGTCAGGTCTCTCTTTCGTCTTGAATTTTCTCTCACAACCCCTAAAACTTTCGCGTTCAAGCCCATCCTCTTGCCTACACATAATCGCTGTCGCAGCATGTCGTCACGACCTTCTGCCTTCGATGCTCTCATGTCAGGGGCTCGTGCCGCCGCCAAGAAGAAGCCCCAATCATCGTCTCCCCAGAAACGGAAAACACCGGATTCTAATTCAAGTCAAAACCCTAAACTCCTCAAGAACACGGAAAGTACAGGTCAGTCTTTGGAACCCAGTAATGATACTAAATGCGCTGAAATTAAAGCTTCCGAGAAGGCACAAGAGCCGACGAAAGAAGACTTAAGCAATGGTGGGCTGACGGGGCCAGAGGATGCACTTGCGGCGAAGAGAATGCGCGTTGTAGGTTCCCAGGAGAAGATTACAGAACTGAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCTGCAGATTTTGACCCCAGTTCGATATCTTGTTGGGACAAGGGTGAACCTGTGCCTTTTCTGTTTCTCAGTTTGGCATTTGATATGATTTCGGAAGAAACAGGACGGATTGTGATGACAGATATAGTATGCAATATGCTGAGGACTGTCATGAACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTTTCCGCAAATAAGTTTGCTCCGGCACATGAAGGGCTGGAATTGGGAATAGGGGATGCTTCAATTATTAAGGCGCTTGCAGAGGCATGCGGAAGAACTGAGGCGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGTGGAAGCCTGATCCATTAACTATTAGGAAGGTTTTTAACACCTTTCGTCTCATTGCCAAGGAATCTGGTAAAGACAGCCAAGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGATTGTGAACCTCAATATCTAATTCGTCTGCTTCAGTCAAAGTTGCGGATTGGGTATGCTGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCACCTCCTGAAATTCAATCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAGGTGTATTCTGTTCTTCCTGTGTATGACAAAATAATTCCTGCATTGCTTAGTGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTTACTCTTGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACTAAGGGTGTATCTGAAATCTTAAACAAATTCCAGGATGTAGAGTTTACGTGTGAGTACAAATATGATGGAGAACGTGCCCAGGTACATTACATGGATAATGGATCCGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGCTAAAGAAATCATCTGTGTCATCATTTGTTCTTGATTGTGAACTTGTTGCATATGAACGAGAAAAAAAGAAAATCCTTCCTTTCCAGGTTCTCAGTACTCGAGCCCGGAAAAATGTTTCTATGAGTGATATAAAAGTTGATGTATGCGTATTTGCCTTTGATATCTTGTATCTCAATGGCAAGCCACTACTTCAAGAAACCCTAAAAACCCGAAGAGAGCATCTCTATGCCTCTTTCGAGGAAGAACCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAAATGATATTGAGGAAATACAAACATTTCTTGATGCAGCAGTTGAGGCTAGTTGTGAGGGTTTAATTATCAAAACTCTATATCAAGATGCTACGTATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGACAATATAGGAGACTCGCTAGTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGTTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAGTTCTTGAAGAACGTTCTGCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGCCTTATTATCGATATGGAGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCGGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCATCGTGCTGCAGCAGGCATAGTAGATTCGGATAAGGGCATTTCTCTTCGGTTCCCTCGTCTAGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATTCTGCCCAAAAGCATAATCACCCAAACAACCAGGATGATGAAGATGATTGA 2394 0.4323 MPSLRSFFSPPFFYPVRSLFRLEFSLTTPKTFAFKPILLPTHNRCRSMSSRPSAFDALMSGARAAAKKKPQSSSPQKRKTPDSNSSQNPKLLKNTESTGQSLEPSNDTKCAEIKASEKAQEPTKEDLSNGGLTGPEDALAAKRMRVVGSQEKITELKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLSLAFDMISEETGRIVMTDIVCNMLRTVMNTTPEDLVAVVYLSANKFAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKEKGDLGLVAKASRSSQSMMWKPDPLTIRKVFNTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPPEIQSPLEEAAKIVKQVYSVLPVYDKIIPALLSGGVWKLPETCNFTLGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQVHYMDNGSVEIYSRNAERNTGKFPDVVAAISRLKKSSVSSFVLDCELVAYEREKKKILPFQVLSTRARKNVSMSDIKVDVCVFAFDILYLNGKPLLQETLKTRREHLYASFEEEPGFLQFATAITSNDIEEIQTFLDAAVEASCEGLIIKTLYQDATYEPSKRSLNWLKLKKDYLDNIGDSLDXVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAVLEERSASLRSKVIPKPKPYYRYGETINPDVWFEASEVWEVKAADLTISPVHRAAAGIVDSDKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYSAQKHNHPNNQDDEDD 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4399g00003 798 Pfam ATP dependent DNA ligase C terminal region 656 767 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pral4399g00003 798 SUPERFAMILY Nucleic acid-binding proteins 639 785 IPR012340 -
Pral4399g00003 798 FunFam DNA ligase 162 429 - -
Pral4399g00003 798 Pfam DNA ligase N terminus 185 360 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral4399g00003 798 Gene3D - 437 635 - -
Pral4399g00003 798 MobiDBLite consensus disorder prediction 110 124 - -
Pral4399g00003 798 Pfam ATP dependent DNA ligase domain 427 631 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pral4399g00003 798 FunFam DNA ligase 427 633 - -
Pral4399g00003 798 Gene3D - 636 797 IPR012340 -
Pral4399g00003 798 NCBIfam ATP-dependent DNA ligase 243 782 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pral4399g00003 798 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 68 796 - -
Pral4399g00003 798 CDD Adenylation_DNA_ligase_I_Euk 416 634 - -
Pral4399g00003 798 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 451 459 IPR016059 GO:0003909
Pral4399g00003 798 Gene3D - 162 429 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral4399g00003 798 MobiDBLite consensus disorder prediction 43 143 - -
Pral4399g00003 798 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 419 637 - -
Pral4399g00003 798 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 167 418 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pral4399g00003 798 MobiDBLite consensus disorder prediction 67 107 - -
Pral4399g00003 798 ProSitePatterns ATP-dependent DNA ligase signature 2. 605 631 IPR016059 GO:0003909
Pral4399g00003 798 Gene3D DNA ligase/mRNA capping enzyme 456 581 - -
Pral4399g00003 798 ProSiteProfiles ATP-dependent DNA ligase family profile. 533 669 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pral4399g00003 798 MobiDBLite consensus disorder prediction 766 798 - -
Pral4399g00003 798 FunFam DNA ligase 636 795 - -
Pral4399g00003 798 CDD OBF_DNA_ligase_I 639 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4399g00003 Pral-Chr4399 9962 18016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4399g00003 46 798 Core DNA Replication Machinery Family AT1G08130 69.816 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4399g00003 K10747 - qsa:O6P43_028431 1199.88