Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4398g00004 ATGTATACACATAAATCTCTTCCGTCTTTGTGTAATAAGCTAGTTGACATGGAAGGCGCCGAGGAATTGGAGTTTGTGGGGCCGTCTGATAACCATGCCACCGTCACCCACATCGCCAAGGGCAAGCGGACCAAGAGGCACAGGCCCTCCTCGCCCTGTGCGGTCGTCGCGGCCATGACCTCCAGCTCATCAAGCGTCTCCGGGGAACACCTCAGCGCCGGTGGAGATTACGGCTCCATTTCGTCCACCACCACTACTCACGACGAGAGCACTGAGGAAGAGGAAGACATGGCTAACTGTTTAATTCTCTTGGCTCAGAGCGGGGATTCCCATAATCTTCAGCACCGACCTCAATCTCAAGCCGCCAGAACAGAACCAGCAGGAGGCAGCCGGAGATTCGCTGAGATGGCCACCGTCACGGCCGGTGCCGCCAAAGTTGGTTTGTTTGTGTACGAGTGCAAAACGTGTAACCGAAGTTTTCCTTCGTTTCAAGCGTTGGGTGGGCACAGGGCCAGCCACAAAAAGCCTAAGATGACGTTAGAAGATAAGAAACCGCCACCGCAGCCGCAACTCATCAACAGTTATGAGATCGAAGAAGGTCCAATAAAAAGCGTCCCTCAAATTTCTCTTCAACTAGGCAGTAACATGAACGGGGTTTTGTCAATCAACAAAGCGAAGATTCACGAGTGTTCAATATGCGGCTCAGAATTCACGTCCGGCCAGGCATTGGGGGGCCACATGAGGAGGCACAGGGCATCCACAGCAGTGGGCGCGCCTCAGGCGGTGGAAGAGAAGCCAAAAGTGCTGGTGTTGGATCTAAACCTGCCGGCGCCGGAAGAGGATCAGAGGGATTCCAAGTTCGAGTTTCCGGCGAAAGAAAAACCACTGGTGCTGTCTGCTCCGTCTCTGGTGGACTGCCATTATTAG 927 0.5383 MYTHKSLPSLCNKLVDMEGAEELEFVGPSDNHATVTHIAKGKRTKRHRPSSPCAVVAAMTSSSSSVSGEHLSAGGDYGSISSTTTTHDESTEEEEDMANCLILLAQSGDSHNLQHRPQSQAARTEPAGGSRRFAEMATVTAGAAKVGLFVYECKTCNRSFPSFQALGGHRASHKKPKMTLEDKKPPPQPQLINSYEIEEGPIKSVPQISLQLGSNMNGVLSINKAKIHECSICGSEFTSGQALGGHMRRHRASTAVGAPQAVEEKPKVLVLDLNLPAPEEDQRDSKFEFPAKEKPLVLSAPSLVDCHY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4398g00004 308 SUPERFAMILY beta-beta-alpha zinc fingers 150 250 IPR036236 -
Pral4398g00004 308 SMART c2h2final6 228 250 IPR013087 -
Pral4398g00004 308 SMART c2h2final6 151 173 IPR013087 -
Pral4398g00004 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Pral4398g00004 308 PANTHER ZINC FINGER PROTEIN ZAT5 63 295 - -
Pral4398g00004 308 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Pral4398g00004 308 MobiDBLite consensus disorder prediction 166 188 - -
Pral4398g00004 308 Gene3D Classic Zinc Finger 148 250 - -
Pral4398g00004 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Pral4398g00004 308 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Pral4398g00004 308 MobiDBLite consensus disorder prediction 110 129 - -
Pral4398g00004 308 MobiDBLite consensus disorder prediction 64 86 - -
Pral4398g00004 308 MobiDBLite consensus disorder prediction 64 91 - -
Pral4398g00004 308 MobiDBLite consensus disorder prediction 110 125 - -
Pral4398g00004 308 Pfam C2H2-type zinc finger 150 176 - -
Pral4398g00004 308 Pfam C2H2-type zinc finger 228 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4398g00004 Pral-Chr4398 28701 29904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4398g00004 36 308 C2H2 Transcription Factor Family AT2G28200 43.322 5.85e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4398g00004 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4398g00004 - - pcin:129297388 471.47