Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4398g00002 ATGTTCAATCTCTCCCTCCTCAAAGACAGGCTCACTCATGTCCAGACACTCGCGGGTATTCTTATTTCCTCGGATCAGACCTTACCAGACTCTACCTGTACAACCTTAGCCAGTATGAATTCTATCATCCAGGAATTCATTGTCACTGCCTCCTCCATGGTGCTCACGTGCCAACACATGTTCCTTAGTTTCTCTCCACCACCAGGTACCCATTGCACTGAATCCAACTTTGGCCATTATACAAGTATGCACAGTAGTAATAATACGAATAACATAGCTCCGCACAGAGAGCAAGGTATCTTCTCTAGTCCTGATGATCAAACCTTGAACTGGTTCGGTGGTGAAAGCTATGATACCAACAATAACTGCGTTAATAATCTCAAGGATGATGATCCGAGTGCTGGGCTTAGTGAAACGAAGAGAGAATTGTCTCAAAGGGATGAGACCGATGAACCAAAGAACGAGGACATAATCGAATTGGATGCTGCTGATTTGCTGGCCAAGTACACACATTACTGTCAAATTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACAAGTGCCGCCTTGAGCAACCCGATGAAGAATAGAGACAAAGAATGTTCGATGAGCACGTTCAGGCCTAAGAAATACTCATGTCCGCAGGAAGGATGTAGGTGGAATCAGAAGCATGCCAAGTTTCAACCGTTGAAGTCAATGATATGTGTGAAGAATCATTACAAGAGAAGTCATTGTCCGAAGATGTACGTGTGCAAAAGGTGCAATTTGAAGCATTTCTCAGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCGTGTGGTACAACGTTTTCAAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGCCGGGCATGCTCCAGCTGTCAGTGGCTTGTCCTATTCTGGAAAATTGGTCGAGCAGCAGGCATTGCAAATGCAGGAAGATGGCGGTAGTGCAAGATCATATGTTTGA 1041 0.4515 MFNLSLLKDRLTHVQTLAGILISSDQTLPDSTCTTLASMNSIIQEFIVTASSMVLTCQHMFLSFSPPPGTHCTESNFGHYTSMHSSNNTNNIAPHREQGIFSSPDDQTLNWFGGESYDTNNNCVNNLKDDDPSAGLSETKRELSQRDETDEPKNEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNRDKECSMSTFRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKHFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFAGHAPAVSGLSYSGKLVEQQALQMQEDGGSARSYV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4398g00002 346 Pfam Zinc finger, C2H2 type 171 193 IPR013087 -
Pral4398g00002 346 Gene3D Classic Zinc Finger 164 228 - -
Pral4398g00002 346 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 2 322 IPR044300 GO:0010044|GO:0010447
Pral4398g00002 346 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Pral4398g00002 346 SMART c2h2final6 224 257 IPR013087 -
Pral4398g00002 346 SMART c2h2final6 171 193 IPR013087 -
Pral4398g00002 346 SMART c2h2final6 262 284 IPR013087 -
Pral4398g00002 346 MobiDBLite consensus disorder prediction 122 154 - -
Pral4398g00002 346 FunFam Zinc finger protein 574 170 195 - -
Pral4398g00002 346 SUPERFAMILY beta-beta-alpha zinc fingers 169 196 IPR036236 -
Pral4398g00002 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Pral4398g00002 346 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4398g00002 Pral-Chr4398 17754 18945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4398g00002 1 317 C2H2 Transcription Factor Family AT5G22890 49.854 1.59e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4398g00002 zf-C2H2 8.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4398g00002 - - pcin:129316246 599.356