Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4397g00015 AACTGGTTCGGTGGTGAAAGCTATGATACCAACAATAACTGCGTTAATAATCTCAAGGATGATGATCCGAGTGCTGGGCTTAGTGAAACGAAGAGAGAATTGTCTCAAAGGGATGAGACCGATGAACCAAAGAACGAGGACATAATCGAATTGGATGCTGCTGATTTGCTGGCCAAGTACACACATTACTGTCAAATTTGTGGGAAAGGGTTTAAACGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGACAAGTGCCGCCTTGAGCAACCCGATGAAGAATAGAGACAAAGAATGTTCGATGAGCACGTTCAGGCCTAAGAAATACTCATGTCCGCAGGAAGGATGTAGGTGGAATCAGAAGCATGCCAAGTTTCAACCGTTGAAGTCAATGATATGTGTGAAGAATCATTACAAGAGAAGTCATTGTCCGAAGATGTACGTGTGCAAAAGGTGCAATTTGAAGCATTTCTCAGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCGTGTGGTACAACGTTTTCAAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGCCGGGCATGCTCCAGCTGTCAGTGGCTTGTCCTATTCTGGAAAATTGGTCGAGCAGCAGGCATTGCAAATGCAGGAAGATGGCGGTAGTGCAAGATCATATGTTTGA 714 0.451 NWFGGESYDTNNNCVNNLKDDDPSAGLSETKRELSQRDETDEPKNEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNRDKECSMSTFRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKHFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFAGHAPAVSGLSYSGKLVEQQALQMQEDGGSARSYV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4397g00015 237 SMART c2h2final6 153 175 IPR013087 -
Pral4397g00015 237 SMART c2h2final6 115 148 IPR013087 -
Pral4397g00015 237 SMART c2h2final6 62 84 IPR013087 -
Pral4397g00015 237 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 213 IPR044300 GO:0010044|GO:0010447
Pral4397g00015 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Pral4397g00015 237 Gene3D Classic Zinc Finger 151 201 - -
Pral4397g00015 237 MobiDBLite consensus disorder prediction 1 45 - -
Pral4397g00015 237 MobiDBLite consensus disorder prediction 24 45 - -
Pral4397g00015 237 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Pral4397g00015 237 Gene3D Classic Zinc Finger 56 120 - -
Pral4397g00015 237 SUPERFAMILY beta-beta-alpha zinc fingers 60 87 IPR036236 -
Pral4397g00015 237 MobiDBLite consensus disorder prediction 1 19 - -
Pral4397g00015 237 FunFam Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 61 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4397g00015 Pral-Chr4397 87396 88198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4397g00015 47 208 C2H2 Transcription Factor Family AT5G22890 77.778 1.17e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4397g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4397g00015 - - pcin:129316246 435.647