Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4397g00002 ATGCCTCGTCGTGGTCGTGGAAAGCAACCAGAAGTTCGCCCCCATCAATCGTCCCCGACCGCATCCCAATCTGCCCCCGGTCGAGATGTTGCTGGAGGCAGGCCGCAAGCCGGACCCGGACGTGGCGCTGCATCTGTATCCGCGACGCCTCCTCCTCCGACTGCGGCCGTTACTCAAGATGCTCCGAGTGCTGAGTTGGGGCGTTTAACGTTGCAGACTCCGGCTCCCTCATCGTCAAAGGCCACGAGATTTGCTGACCGACCAGATTTTGGTAGAATGGGGAAAAGAATTCAAGTTCGTGCAAATCACTTTCTCGTTGAGGTGGCTGATAAGGATCTTCATCACTACGATGTATCTATATCTCCAGAAATTACTTCGAAAAAGATCTCTAGGAATGTCATGAATCAACTAGTCCAGCTGTACAGGGAGTCACACCTGAACAAGCGAACACCAGCTTATGATGGCCGGAAGAGTCTTTATACAGCAGGCCCTTTGCCGTTCTCGTCAAAGGAATTCGTGGTTAAGTTGGTAGATAGCGATGAACAAGCCAGTTCTTCCGGTTCAACGAGGAACAAACGTGAGCGCGAGTTTAAGGTCACGATTCGTTATGCTTCCAAGGCTGATCTTCACCATTTGCAGCAGTTTCTAAGATGTCGACAGCTGGACAATCCACAAGAAACAATTCAAGCACTCGATGTTGTCCTCAGGGCATCACCATCTGAGAAGTATACTGTTGTCGGTAGATCTTTTTTCTCACCAAGCTTGGGTCAGACTGGCGAGCTTGGTGATGGAATAGAATATTGGAGAGGATATTATCAAAGCATCCGGCCGACCCAGATGGGACTTTCCCTTAATATTGATGTATCAGCAAGGGCATTTTATGAAGACATCTTTGTGACTGACTTTATTGCAAAGCACTTTAATTTTAATTTTTCAAGGCGTCTGTCTGATCAAGACAGAATTAAGATTAAGAAAGCCTTAAGAGGAGTGAAGGTAGAATTCACTAATGGTCAGTGTACTAGAAGTTACAAAATTACTGGAATCTCCAAAGAACCACTGAGCGAGTTGATGTTTACTCTCGATGACAAGAGAACAAAAATAACTGTTGTTCGTTACTTTCGTGATAAATACAATGTTGAGCTCAAGCATTTGTCTCTTCCTGCCCTCCAAGCTGGGAATGATACAAAACCTATTTATTTGCCTATGGAGCTTTGCAAGATAGTTGCTGGGCAAAGGTACACAAAGAAACTGAATGAGAGGCAGGTAACCGCCCTTTTGAGAGCAACCTGTCAACGACCTTCTGACAGGGAGAAGGACATTAGAGAGATGGTCAGGCGTAACAATTTTAGCAGAGACAGGCTTGTACACGAATTTGGTATTAACGTGAATGAACAACTGGCAGTGTGTGATGCACGTGTTTTGCCTCCTCCAAGGCTTAAATATCATGAAACTGGGAAGGAAGCAGTTGTTGAACCCTGGAGGGGCCAGTGGAATATGATAAACAAGAAAATGTTTGATGGTGGAAAAGTGCAATATTGGACTTGTCTCAACTTTTCTACACGGGTGAACAGAGATTTGCCTGGTCAATTCTGTAATGAGTTGGTAAATATGTGCAGCAGTAAGGGAATTGTTTTCAATCGAACCCCATTACTTCCTATAAGGTCAGCTCATCCTGGCCAAATAGAGGGACTTCTCAGAGATGTCTACAAGCAATCTAATGGGAAACTTCAGCTGTTGATTATAATCTTGCCTGACATTAAAGGTTCCTATGCAAAGATTAAACGGATTTGTGAAACAGAATTGGGAATAGTGTCTCAATGCTCTCAGCCAAAGGAAGCTTCAAGGCTTAATAAGCAATATCTTGAAAATTTGGCCCTCAAGATCAATGTTAAGGTTGGGGGGCGCAATACAGTGTTGATCGATGCAATTCAAGGGAAAATTCCTCATGTGACTGATCGCCCTACTATAATATTTGGTGCGGATGTAACACATCCTCAGCCAGGGGAGGACTCAAGCCCTTCTATAGCAGCTGTAGTGGCATCCATGGATTGGCCGCAAGTCACCAAGTACCGTGGAATTGTTTCAGCCCAGTCTCACCGTGAAGAAATTATATTGGATCTCCATAAAACTTTTCAGGATCCTCAGAGGGGAGTTGTACACGGCGGAATGATTAGAGAGCTACTTGTTGCATTCTATAAATCAACCAGGCATAAGCCAGACAGGATATTATTCTACAGAGATGGAGTTAGTGAAGGCCAATTCAGTCAGGTTCTACTTCATGAGATGGAAGCTATAAGGAAGGCTTGTGCCTCATTGGAGGAAGGATATCAGCCAAGAGTAACCTTCTTGGTGGTACAGAAAAGACATCATACCCGATTCTTTCCTGTTGATCATAACAGTCGTGACCAGACCGATAAAAGTGGAAATATTTTGCCAGGCACTGTTGTTGATACTCGTATCTGCCATCCCAGAGAATTTGACTTTTACCTTAACAGCCATGCTGGAATTAAGGGAACTAGCCGACCTACACACTATCATGTGCTGTTTGATGAGAATAATTTCAAGGCTGACGAGCTCCAGATGTTAACAAACAACTTGTGTTACACGTATGCAAGGTGCACTAGATCGGTGTCTATAGTACCTCCTGCTTATTATGCACACTTGGCTGCTTTCCGTGCTCGATACTACATTGAAGGCGAGACATCAGATGTGGATTCTGGAAGTGGAAGTAGGAGCACTAACGTGGTGCTAACTCTTCCAGCGATTAAGGACAATGTCAAGGATGTTATGTTTTATTGTTAA 2802 0.444 MPRRGRGKQPEVRPHQSSPTASQSAPGRDVAGGRPQAGPGRGAASVSATPPPPTAAVTQDAPSAELGRLTLQTPAPSSSKATRFADRPDFGRMGKRIQVRANHFLVEVADKDLHHYDVSISPEITSKKISRNVMNQLVQLYRESHLNKRTPAYDGRKSLYTAGPLPFSSKEFVVKLVDSDEQASSSGSTRNKREREFKVTIRYASKADLHHLQQFLRCRQLDNPQETIQALDVVLRASPSEKYTVVGRSFFSPSLGQTGELGDGIEYWRGYYQSIRPTQMGLSLNIDVSARAFYEDIFVTDFIAKHFNFNFSRRLSDQDRIKIKKALRGVKVEFTNGQCTRSYKITGISKEPLSELMFTLDDKRTKITVVRYFRDKYNVELKHLSLPALQAGNDTKPIYLPMELCKIVAGQRYTKKLNERQVTALLRATCQRPSDREKDIREMVRRNNFSRDRLVHEFGINVNEQLAVCDARVLPPPRLKYHETGKEAVVEPWRGQWNMINKKMFDGGKVQYWTCLNFSTRVNRDLPGQFCNELVNMCSSKGIVFNRTPLLPIRSAHPGQIEGLLRDVYKQSNGKLQLLIIILPDIKGSYAKIKRICETELGIVSQCSQPKEASRLNKQYLENLALKINVKVGGRNTVLIDAIQGKIPHVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPQVTKYRGIVSAQSHREEIILDLHKTFQDPQRGVVHGGMIRELLVAFYKSTRHKPDRILFYRDGVSEGQFSQVLLHEMEAIRKACASLEEGYQPRVTFLVVQKRHHTRFFPVDHNSRDQTDKSGNILPGTVVDTRICHPREFDFYLNSHAGIKGTSRPTHYHVLFDENNFKADELQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSDVDSGSGSRSTNVVLTLPAIKDNVKDVMFYC 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4397g00002 933 Pfam PAZ domain 318 425 IPR003100 GO:0005515
Pral4397g00002 933 Gene3D - 647 933 IPR036397 GO:0003676
Pral4397g00002 933 Pfam Mid domain of argonaute 492 570 IPR032473 -
Pral4397g00002 933 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 76 899 - -
Pral4397g00002 933 Pfam Piwi domain 580 897 IPR003165 GO:0003676
Pral4397g00002 933 Pfam N-terminal domain of argonaute 95 235 IPR032474 -
Pral4397g00002 933 MobiDBLite consensus disorder prediction 70 89 - -
Pral4397g00002 933 CDD PAZ_argonaute_like 299 408 - -
Pral4397g00002 933 SMART PAZ_2_a_3 301 429 IPR003100 GO:0005515
Pral4397g00002 933 CDD Piwi_ago-like 455 897 IPR045246 -
Pral4397g00002 933 SMART DUF1785_2 244 296 IPR014811 -
Pral4397g00002 933 SMART Piwi_a_2 578 898 IPR003165 GO:0003676
Pral4397g00002 933 FunFam Argonaute 10 473 640 - -
Pral4397g00002 933 Pfam Argonaute linker 1 domain 246 295 IPR014811 -
Pral4397g00002 933 ProSiteProfiles Piwi domain profile. 578 898 IPR003165 GO:0003676
Pral4397g00002 933 SUPERFAMILY Ribonuclease H-like 571 898 IPR012337 -
Pral4397g00002 933 ProSiteProfiles PAZ domain profile. 297 409 IPR003100 GO:0005515
Pral4397g00002 933 Pfam Argonaute linker 2 domain 435 481 IPR032472 -
Pral4397g00002 933 Gene3D - 473 640 - -
Pral4397g00002 933 MobiDBLite consensus disorder prediction 1 60 - -
Pral4397g00002 933 Gene3D paz domain 291 413 - -
Pral4397g00002 933 FunFam protein argonaute 10-like 646 933 - -
Pral4397g00002 933 SUPERFAMILY PAZ domain 97 449 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4397g00002 Pral-Chr4397 1801 7709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4397g00002 56 933 Eukaryotic Initiation Factors Gene Family AT1G48410 60.663 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4397g00002 K11593 - jre:109001082 1327.38