Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4396g00062 ATGCCTCGTCGTGGTCGTGGAAAGCAACCAGAAGTTCGCCCCCATCAATCGTCCCCGACCGCATCCCAATCTGCCCCCGGTCGAGATGTTGCTGGAGGCAGGCCGCAAGCCGGACCCGGACGTGGCGCTGCATCTGTATCCGCGACGCCTCCTCCTCCGACTGCGGCCGTTACTCAAGATGCTCCGAGTGCTGAGTTGGGGCGTTTAACGTTGCAGACTCCGGCTCCCTCATCGTCAAAGGCCACGAGATTTGCTGACCGACCAGATTTTGGTAGAATGGGGAAAAGAATTCAAGTTCGTGCAAATCACTTTCTCGTTGAGGTGGCTGATAAGGATCTTCATCACTACGATGTATCTATATCTCCAGAAATTACTTCGAAAAAGATCTCTAGGAATGTCATGAATCAACTAGTCCAGCTGTACAGGGAGTCACACCTGAACAAGCGAACACCAGCTTATGATGGCCGGAAGAGTCTTTATACAGCAGGCCCTTTGCCGTTCTCGTCAAAGGAATTCGTGGTTAAGTTGGTAGATAGCGATGAACAAGCCAGTTCTTCCGGTTCAACGAGGAACAAACGTGAGCGCGAGTTTAAGGTCACGATTCGTTATGCTTCCAAGGCTGATCTTCACCATTTGCAGCAGTTTCTAAGATGTCGACAGCTGGACAATCCACAAGAAACAATTCAAGCACTCGATGTTGTCCTCAGGGCATCACCATCTGAGAAGTATACTGTTGTCGGTAGATCTTTTTTCTCACCAAGCTTGGGTCAGACTGGCGAGCTTGGTGATGGAATAGAATATTGGAGAGGATATTATCAAAGCATCCGGCCGACCCAGATGGGACTTTCCCTTAATATTGATGTATCAGCAAGGGCATTTTATGAAGACATCTTTGTGACTGACTTTATTGCAAAGCACTTTAATTTTAATTTTTCAAGGCGTCTGTCTGATCAAGACAGAATTAAGATTAAGAAAGCCTTAAGAGGAGTGAAGGTAGAATTCACTAATGGTCAGTGTACTAGAAGTTACAAAATTACTGGAATCTCCAAAGAACCACTGAGCGAGTTGATGTTTACTCTCGATGACAAGAGAACAAAAATAACTGTTGTTCGTTACTTTCGTGATAAATACAATGTTGAGCTCAAGCATTTGTCTCTTCCTGCCCTCCAAGCTGGGAATGATACAAAACCTATTTATTTGCCTATGGAGCTTTGCAAGATAGTTGCTGGGCAAAGGTACACAAAGAAACTGAATGAGAGGCAGATGGTCAGGCGTAACAATTTTAGCAGAGACAGGCTTGTACACGAATTTGGTATTAACGTGAATGAACAACTGGCAGTGTGTGATGCACGTGTTTTGCCTCCTCCAAGGCTTAAATATCATGAAACTGGGAAGGAAGCAGTTGTTGAACCCTGGAGGGGCCAGTGGAATATGATAAACAAGAAAATGTTTGATGGTGGAAAAGTGCAATATTGGACTTGTCTCAACTTTTCTACACGGGTGAACAGAGATTTGCCTGGTCAATTCTGTAATGAGTTGGTAAATATGTGCAGCAGTAAGGGAATTGTTTTCAATCGAACCCCATTACTTCCTATAAGGTCAGCTCATCCTGGCCAAATAGAGGGACTTCTCAGAGATGTCTACAAGCAATCTAATGGGAAACTTCAGCTGTTGATTATAATCTTGCCTGACATTAAAGGTTCCTATGCAAAGATTAAACGGATTTGTGAAACAGAATTGGGAATAGTGTCTCAATGCTCTCAGCCAAAGGAAGCTTCAAGGCTTAATAAGCAATATCTTGAAAATTTGGCCCTCAAGATCAATGTTAAGGTTGGGGGGCGCAATACAGTGTTGATCGATGCAATTCAAGGGAAAATTCCTCATGTGACTGATCGCCCTACTATAATATTTGGTGCGGATGTAACACATCCTCAGCCAGGGGAGGACTCAAGCCCTTCTATAGCAGCTGTAGTGGCATCCATGGATTGGCCGCAAGTCACCAAGTACCGTGGAATTGTTTCAGCCCAGTCTCACCGTGAAGAAATTATATTGGATCTCCATAAAACTTTTCAGGATCCTCAGAGGGGAGTTGTACACGGCGGAATGATTAGAGAGCTACTTGTTGCATTCTATAAATCAACCAGGCATAAGCCAGACAGGATATTATTCTACAGAGATGGAGTTAGTGAAGGCCAATTCAGTCAGGTTCTACTTCATGAGATGGAAGCTATAAGGAAGGCTTGTGCCTCATTGGAGGAAGGATATCAGCCAAGAGTAACCTTCTTGGTGGTACAGAAAAGACATCATACCCGATTCTTTCCTGTTGATCATAACAGTCGTGACCAGACCGATAAAAGTGGAAATATTTTGCCAGGCACTGTTGTTGATACTCGTATCTGCCATCCCAGAGAATTTGACTTTTACCTTAACAGCCATGCTGGAATTAAGGGAACTAGCCGACCTACACACTATCATGTGCTGTTTGATGAGAATAATTTCAAGGCTGACGAGCTCCAGATGTTAACAAACAACTTGTGTTACACGTATGCAAGGTGCACTAGATCGGTGTCTATAGTACCTCCTGCTTATTATGCACACTTGGCTGCTTTCCGTGCTCGATACTACATTGAAGGCGAGACATCAGATGTGGATTCTGGAAGTGGAAGTAGGAGCACTAACGTGGTGCTAACTCTTCCAGCGATTAAGGACAATGTCAAGGATGTTATGTTTTATTGTTAA 2739 0.4425 MPRRGRGKQPEVRPHQSSPTASQSAPGRDVAGGRPQAGPGRGAASVSATPPPPTAAVTQDAPSAELGRLTLQTPAPSSSKATRFADRPDFGRMGKRIQVRANHFLVEVADKDLHHYDVSISPEITSKKISRNVMNQLVQLYRESHLNKRTPAYDGRKSLYTAGPLPFSSKEFVVKLVDSDEQASSSGSTRNKREREFKVTIRYASKADLHHLQQFLRCRQLDNPQETIQALDVVLRASPSEKYTVVGRSFFSPSLGQTGELGDGIEYWRGYYQSIRPTQMGLSLNIDVSARAFYEDIFVTDFIAKHFNFNFSRRLSDQDRIKIKKALRGVKVEFTNGQCTRSYKITGISKEPLSELMFTLDDKRTKITVVRYFRDKYNVELKHLSLPALQAGNDTKPIYLPMELCKIVAGQRYTKKLNERQMVRRNNFSRDRLVHEFGINVNEQLAVCDARVLPPPRLKYHETGKEAVVEPWRGQWNMINKKMFDGGKVQYWTCLNFSTRVNRDLPGQFCNELVNMCSSKGIVFNRTPLLPIRSAHPGQIEGLLRDVYKQSNGKLQLLIIILPDIKGSYAKIKRICETELGIVSQCSQPKEASRLNKQYLENLALKINVKVGGRNTVLIDAIQGKIPHVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPQVTKYRGIVSAQSHREEIILDLHKTFQDPQRGVVHGGMIRELLVAFYKSTRHKPDRILFYRDGVSEGQFSQVLLHEMEAIRKACASLEEGYQPRVTFLVVQKRHHTRFFPVDHNSRDQTDKSGNILPGTVVDTRICHPREFDFYLNSHAGIKGTSRPTHYHVLFDENNFKADELQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGETSDVDSGSGSRSTNVVLTLPAIKDNVKDVMFYC 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4396g00062 912 SUPERFAMILY PAZ domain 97 419 IPR036085 GO:0005515
Pral4396g00062 912 ProSiteProfiles Piwi domain profile. 557 877 IPR003165 GO:0003676
Pral4396g00062 912 FunFam protein argonaute 10-like 625 912 - -
Pral4396g00062 912 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 76 878 - -
Pral4396g00062 912 Gene3D - 452 619 - -
Pral4396g00062 912 CDD Piwi_ago-like 434 876 IPR045246 -
Pral4396g00062 912 Pfam Piwi domain 559 876 IPR003165 GO:0003676
Pral4396g00062 912 Pfam PAZ domain 318 421 IPR003100 GO:0005515
Pral4396g00062 912 Pfam Argonaute linker 1 domain 246 295 IPR014811 -
Pral4396g00062 912 SMART Piwi_a_2 557 877 IPR003165 GO:0003676
Pral4396g00062 912 MobiDBLite consensus disorder prediction 70 89 - -
Pral4396g00062 912 CDD PAZ_argonaute_like 299 408 - -
Pral4396g00062 912 SMART DUF1785_2 244 296 IPR014811 -
Pral4396g00062 912 FunFam Argonaute 10 452 619 - -
Pral4396g00062 912 Pfam N-terminal domain of argonaute 95 235 IPR032474 -
Pral4396g00062 912 Pfam Mid domain of argonaute 471 549 IPR032473 -
Pral4396g00062 912 Pfam Argonaute linker 2 domain 421 460 IPR032472 -
Pral4396g00062 912 ProSiteProfiles PAZ domain profile. 297 409 IPR003100 GO:0005515
Pral4396g00062 912 SMART PAZ_2_a_3 301 431 IPR003100 GO:0005515
Pral4396g00062 912 SUPERFAMILY Ribonuclease H-like 550 877 IPR012337 -
Pral4396g00062 912 Gene3D paz domain 291 413 - -
Pral4396g00062 912 MobiDBLite consensus disorder prediction 1 60 - -
Pral4396g00062 912 Gene3D - 626 912 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4396g00062 Pral-Chr4396 392310 398229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4396g00062 56 912 Eukaryotic Initiation Factors Gene Family AT1G48410 59.006 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4396g00062 K11593 - jre:109001082 1285.01