Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4396g00048 ATGGAGTTCTGGGGTGTTGAGGTTAAGGCTGGGGAGCCTGTTAAAGTTGATCCTCAAGATTTCGATGCCTACATCCATCTTTCTCAGGCTGCTCTTGGTGAGACGAAGAAAGATAAGGGGGCTGAACCTGTGGTTCTTTACTTAAAATTTGATGACCAGAAGTTTGTTTTGGGAACGCTTTCAAAGGATAGTTTCCCCCAGATATCTTTTGACTTGGTTTTGGAAAAGGAGTTTGAGCTATCCCACAATTCGAAAAATGTGAGCGTCTTTTTCTGTGGATATAAAGCTGAACTTCCTGATGAAGAGGGTGATGACTTTGACAACTTATCTGATAGTGATGAGGACGCAGAACTCCCAGTGATAACAAAAGATAATGGAAAACTTGATGCTAAGTCTGGCCTAGCTAAGCTTGCCGCATCCAAGAAAAGCGATGCCAGTGCTAATGATTCCAAAAAGCAGGGCAAGGTTGAGCCAAAGAACGAAGATGACGATTCTGAAGATGATGAGGATGATGAATCTGATGAAGATGGTGAGGATGGAAGTTCTGATGAGGATATGATGGAAGCTGATAGTGATAGTGATGAGGAGAGTGATGATGATGAAGATGAGGAGGAGACTCCCAAGAAGGTGGATCTGAGTAAGAAGAGGCCCAATGATTCTGCATCAAAAACTCCAGTTTCTGCCAAGAAAGCTAAATCTGGTACTCCTGAAAAGAATGATGCTAAGAAAGGTGGTCATACCGCTACTCCTCACCCAATGAAGAAGGGAGGAAAGACTCCTAACAGTGAAGCCAAGGAGCCTAAGTCTGGTGGACAATTGTCCTGCAAATCTTGCAGCAAGACTTTCAACTCTGAAGGTGGTCTTCAACAACATAAAAAGGCAAAGCATGGTGGTCAGTGA 900 0.4356 MEFWGVEVKAGEPVKVDPQDFDAYIHLSQAALGETKKDKGAEPVVLYLKFDDQKFVLGTLSKDSFPQISFDLVLEKEFELSHNSKNVSVFFCGYKAELPDEEGDDFDNLSDSDEDAELPVITKDNGKLDAKSGLAKLAASKKSDASANDSKKQGKVEPKNEDDDSEDDEDDESDEDGEDGSSDEDMMEADSDSDEESDDDEDEEETPKKVDLSKKRPNDSASKTPVSAKKAKSGTPEKNDAKKGGHTATPHPMKKGGKTPNSEAKEPKSGGQLSCKSCSKTFNSEGGLQQHKKAKHGGQ 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4396g00048 299 Gene3D Classic Zinc Finger 273 299 - -
Pral4396g00048 299 MobiDBLite consensus disorder prediction 265 288 - -
Pral4396g00048 299 MobiDBLite consensus disorder prediction 161 206 - -
Pral4396g00048 299 FunFam Histone deacetylase HDT1 1 100 - -
Pral4396g00048 299 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Pral4396g00048 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 299 IPR013087 -
Pral4396g00048 299 SMART c2h2final6 273 296 IPR013087 -
Pral4396g00048 299 Gene3D Nucleoplasmin core domain 1 100 - -
Pral4396g00048 299 ProSitePatterns Zinc finger C2H2 type domain signature. 275 296 IPR013087 -
Pral4396g00048 299 MobiDBLite consensus disorder prediction 233 247 - -
Pral4396g00048 299 MobiDBLite consensus disorder prediction 145 160 - -
Pral4396g00048 299 MobiDBLite consensus disorder prediction 101 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4396g00048 Pral-Chr4396 292339 295361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4396g00048 1 296 C2H2 Transcription Factor Family AT5G03740 37.304 1.57e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4396g00048 NPL 7e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4396g00048 - - gmx:100792094 301.212