Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4396g00042 ATGGACGACTCCGAGGCGTTCGGAAATTCTAACCCCGGCGATGGAGCAAAAGCAAAGCCGAAGGTGATTGTGATAATGGGTCCCACTGGCTCTGGGAAGTCCAAGCTCGCCATTGATCTGGCTTCTCACTTTCCGGTCGAAGCTATAAACGCTGATTCCATGCAGGTTTACCGAGGCCTGGATGTTCTCACGAACAAAGTTCCACTCTCGGACCAGAAGGGGGTGCCTCACCATCTTCTGGGTACTATAAGTCCAAACGTGGAATTCACAGCTAAAGACTTTCGAGATTCCGCTATCCCTCTCATCAATGACATATCTGCTCGCAACTGCTTGCCTGTCATAGTTGGGGGTACGAATTATTTCATCCAGGCTCTCGTGAGTCCATTCCTTCTAGATGAGTCAGTTGAAGATATGGATGAACCCTGCCTGGACAACCTTTCTGGTAATACACAGTTGGATAAGAGTTTCATCCCTGAAAAGGAAAATTCAAACAATAATTATGATTTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATGCATCCAAATAACCATAGAAAGATTAGTCAATACCTTAGTTTGTATGCTCGCACTGGAGTTCTCCCAAGCAAAATTTTCCAAGGAAAAGCAGCGGAGAAGTGGGGTCAAGTTGGTAACTCGAGATATGATTGCTGTTTTATATGTGTGGATGCAACCCTTCCTGTACTGGACAGATACGTAGAACAGAGGGTAGATTGCATGATAGATGCTGGATTACTTAATGAAGTCTATGACATTTACAATCCAAATGCTGATTATAGTCGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAACCTCTTCTGAAAACCCTTGTAATTGATGAAATCTACAAAAGTAAGAAAGAATTGACTGAGGATTTCAGGAGAGAAAAGGGCGATAAATTGTGTAATGATGATCTGAGGGAGCTCTTGAAGTTGTCTTCTGACTCGAAATCCATCACACTTATGGAAGAAGCAATTGAAAAAGTAAAGGTTAACACACGGAGACTAGTCCGCCGTCAGAAGAGGATGCTTAATCGACTGCAAAAATTGTTTGATTGGACTATACACTACGTGGATTCGACAGAATCATTATCAAGTAAATCAGATGATGTATGGACTGTCCAAGTGGTAGAACAGACGGTGAAGATCGTTAGATCTTTCCTTGGTGATAATGAGAGCTTGTCATCCACGTCTGGGACATTAAATAGCAGTGGGATGAAGTTATTTCAAAGGGACCTCTGGACTCAATACGTGTGCAAGGCCTGTGGAGATAGGGTGCTTAGAGGAATACATGAATGGGAACAACACAAAAAGGGTCGTGGACACCGGAAACGTATTTCTAGTCTCAAGAACAAATCACAAGGTCCCTGTTTGGTGGAACAACAGCCGAAACATTAG 1428 0.4328 MDDSEAFGNSNPGDGAKAKPKVIVIMGPTGSGKSKLAIDLASHFPVEAINADSMQVYRGLDVLTNKVPLSDQKGVPHHLLGTISPNVEFTAKDFRDSAIPLINDISARNCLPVIVGGTNYFIQALVSPFLLDESVEDMDEPCLDNLSGNTQLDKSFIPEKENSNNNYDLLKDIDPVAANRMHPNNHRKISQYLSLYARTGVLPSKIFQGKAAEKWGQVGNSRYDCCFICVDATLPVLDRYVEQRVDCMIDAGLLNEVYDIYNPNADYSRGLRQAIGVREFEPLLKTLVIDEIYKSKKELTEDFRREKGDKLCNDDLRELLKLSSDSKSITLMEEAIEKVKVNTRRLVRRQKRMLNRLQKLFDWTIHYVDSTESLSSKSDDVWTVQVVEQTVKIVRSFLGDNESLSSTSGTLNSSGMKLFQRDLWTQYVCKACGDRVLRGIHEWEQHKKGRGHRKRISSLKNKSQGPCLVEQQPKH 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4396g00042 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 359 IPR027417 -
Pral4396g00042 475 Gene3D - 20 420 IPR027417 -
Pral4396g00042 475 MobiDBLite consensus disorder prediction 449 475 - -
Pral4396g00042 475 Hamap tRNA dimethylallyltransferase [miaA]. 22 375 IPR018022 GO:0008033
Pral4396g00042 475 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 19 398 IPR039657 -
Pral4396g00042 475 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 22 294 IPR018022 GO:0008033
Pral4396g00042 475 FunFam tRNA dimethylallyltransferase 422 465 - -
Pral4396g00042 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 129 IPR027417 -
Pral4396g00042 475 Gene3D - 150 210 - -
Pral4396g00042 475 Pfam IPP transferase 55 352 - -
Pral4396g00042 475 Gene3D Classic Zinc Finger 422 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4396g00042 Pral-Chr4396 237040 240470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4396g00042 25 461 C2H2 Transcription Factor Family AT2G27760 57.823 3.01e-179 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4396g00042 K00791 - gmx:100792690 684.1