Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4396g00019 | ATGGCCGAAGAACATCGATGCCAAGCTCCACGCCTTTGCGTTAACAACTGCGGCTTCTTTGGTAGCCCGGCGACACAAAACCTATGTTCCAAGTGCTACCGAGATTTGCAGCTCACGGAACAACAATCCTCCTCTGCTAAGTTGGTTCTCAACCAATCCCTTGCTCCTCCGTCTTCGACGACCTCGCAGTCGTCGTCTTCGCCGGTACAGATCGACGGAACTTCGTCCTCGGCTGCATTCGATCCCCCACGCTCAGCGGACGTGGTCAAGATTGGATCTTCGGTGGCGCAGTCACCGGCTCAGCCGAGCCGGTGCTTGACTTGTAGGCGGCGCGTGGGCCTCACAGGATTCAAGTGCAGGTGCGGATCAACATTTTGCGGCTCCCACCGGTACCCAGAACAGCACGGATGTGAGTTCGACTTCAAGGGTATGGGCAGGGAGCAGATCGCGAAGGCAAATCCGGTGGTCAAGGGCGAAAAGCTCGAGAAGATCTGA | 495 | 0.5697 | MAEEHRCQAPRLCVNNCGFFGSPATQNLCSKCYRDLQLTEQQSSSAKLVLNQSLAPPSSTTSQSSSSPVQIDGTSSSAAFDPPRSADVVKIGSSVAQSPAQPSRCLTCRRRVGLTGFKCRCGSTFCGSHRYPEQHGCEFDFKGMGREQIAKANPVVKGEKLEKI | 164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4396g00019 | 164 | ProSiteProfiles | Zinc finger A20-type profile. | 7 | 41 | IPR002653 | GO:0003677|GO:0008270 | |
| Pral4396g00019 | 164 | Gene3D | - | 1 | 69 | - | - | |
| Pral4396g00019 | 164 | Gene3D | - | 81 | 160 | IPR035896 | - | |
| Pral4396g00019 | 164 | MobiDBLite | consensus disorder prediction | 52 | 84 | - | - | |
| Pral4396g00019 | 164 | Pfam | A20-like zinc finger | 11 | 34 | IPR002653 | GO:0003677|GO:0008270 | |
| Pral4396g00019 | 164 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 12 | 59 | - | - | |
| Pral4396g00019 | 164 | SUPERFAMILY | AN1-like Zinc finger | 94 | 159 | IPR035896 | - | |
| Pral4396g00019 | 164 | MobiDBLite | consensus disorder prediction | 52 | 81 | - | - | |
| Pral4396g00019 | 164 | Pfam | AN1-like Zinc finger | 107 | 141 | IPR000058 | GO:0008270 | |
| Pral4396g00019 | 164 | ProSiteProfiles | Zinc finger AN1-type profile. | 99 | 145 | IPR000058 | GO:0008270 | |
| Pral4396g00019 | 164 | FunFam | Zinc finger AN1-type containing 6 | 81 | 160 | - | - | |
| Pral4396g00019 | 164 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 9 | 164 | - | - | |
| Pral4396g00019 | 164 | SMART | AN1_Zf_4 | 105 | 142 | IPR000058 | GO:0008270 | |
| Pral4396g00019 | 164 | SMART | A20_3 | 10 | 34 | IPR002653 | GO:0003677|GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4396g00019 | Pral-Chr4396 | 119464 | 120788 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4396g00019 | 1 | 164 | C2H2 Transcription Factor Family | AT3G52800 | 53.529 | 4.51e-51 | 159 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4396g00019 | - | - | pcin:129295477 | 286.574 |