Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4396g00017 ATGGATTTAAGAGAATATTACAGTGCAGACAAGAGTATGAACTTTCATGCTCCCGCTTTCTTTGAATGGCTCAAACCGTCTTCATATCCTCCTCCTCCTCCTCCTTCATCTTCTGTGATTCACAAAGAGACTATTCAGTTTTTGCCAATTTTAACTGAAAAGCCCTCAAAAGAGGAAGGCTATGGTACTGTTGGGGTAATTAAAGAAGAGAAGGACGACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAACACACAAGGTTTTGAGGCTGATGATGATCAGAAGAATAAGAAAGTTACCGATGTGAAGGAAGAAGAAGTGGTGAATAATAGAAGCTTTCAAGAGTGCTCTAAGAATTCTAACACAGAGAGAAGATTCTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGTTCCATATGCAGCAAAACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTACAGAAAAGGAGCAGAATCACTGAAAGGAACACAACCAGCGGCAATGCTGAGACTGCCATGTTACTGTTGTGCCCAAGGCTGCAAAAACAACATCAACCATCCAAGAAGCAAGCCTCTTAAGGACTTCAGAACTCTCCAAACCCATTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGCGCCAAACCCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTCTGGTATTGCTCCTGCGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACACCCCTCGTTTTGAAGATGATGATGACAAGGAATATTCCATCACTACTACTTCAGCCTCTCAAGAATGTTAA 912 0.4254 MDLREYYSADKSMNFHAPAFFEWLKPSSYPPPPPPSSSVIHKETIQFLPILTEKPSKEEGYGTVGVIKEEKDDVDEQVTVALHIGLPNTQGFEADDDQKNKKVTDVKEEEVVNNRSFQECSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGAESLKGTQPAAMLRLPCYCCAQGCKNNINHPRSKPLKDFRTLQTHFKRKHGSKPFVCRKCAKPFAVKGDWRTHEKNCGKFWYCSCGSDFKHKRSLKDHIRSFGKGHTPRFEDDDDKEYSITTTSASQEC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4396g00017 303 SUPERFAMILY beta-beta-alpha zinc fingers 136 168 IPR036236 -
Pral4396g00017 303 SUPERFAMILY beta-beta-alpha zinc fingers 215 249 IPR036236 -
Pral4396g00017 303 Pfam Zinc finger, C2H2 type 145 164 IPR013087 -
Pral4396g00017 303 Gene3D Classic Zinc Finger 225 291 - -
Pral4396g00017 303 PANTHER ZINC FINGER PROTEIN WIP2 37 291 IPR043584 GO:0003700|GO:0010468
Pral4396g00017 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Pral4396g00017 303 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Pral4396g00017 303 SMART c2h2final6 145 167 IPR013087 -
Pral4396g00017 303 SMART c2h2final6 229 249 IPR013087 -
Pral4396g00017 303 SMART c2h2final6 192 224 IPR013087 -
Pral4396g00017 303 Gene3D Classic Zinc Finger 144 167 - -
Pral4396g00017 303 FunFam Zinc finger protein WIP2 198 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4396g00017 Pral-Chr4396 104804 106544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4396g00017 11 282 C2H2 Transcription Factor Family AT1G08290 54.769 2.01e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4396g00017 zf-C2H2 0.00048 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4396g00017 - - gmx:100788451 409.453