Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4396g00017 | ATGGATTTAAGAGAATATTACAGTGCAGACAAGAGTATGAACTTTCATGCTCCCGCTTTCTTTGAATGGCTCAAACCGTCTTCATATCCTCCTCCTCCTCCTCCTTCATCTTCTGTGATTCACAAAGAGACTATTCAGTTTTTGCCAATTTTAACTGAAAAGCCCTCAAAAGAGGAAGGCTATGGTACTGTTGGGGTAATTAAAGAAGAGAAGGACGACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAACACACAAGGTTTTGAGGCTGATGATGATCAGAAGAATAAGAAAGTTACCGATGTGAAGGAAGAAGAAGTGGTGAATAATAGAAGCTTTCAAGAGTGCTCTAAGAATTCTAACACAGAGAGAAGATTCTGGATACCAACTCCTGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGTTCCATATGCAGCAAAACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTACAGAAAAGGAGCAGAATCACTGAAAGGAACACAACCAGCGGCAATGCTGAGACTGCCATGTTACTGTTGTGCCCAAGGCTGCAAAAACAACATCAACCATCCAAGAAGCAAGCCTCTTAAGGACTTCAGAACTCTCCAAACCCATTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGCGCCAAACCCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTCTGGTATTGCTCCTGCGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACACCCCTCGTTTTGAAGATGATGATGACAAGGAATATTCCATCACTACTACTTCAGCCTCTCAAGAATGTTAA | 912 | 0.4254 | MDLREYYSADKSMNFHAPAFFEWLKPSSYPPPPPPSSSVIHKETIQFLPILTEKPSKEEGYGTVGVIKEEKDDVDEQVTVALHIGLPNTQGFEADDDQKNKKVTDVKEEEVVNNRSFQECSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGAESLKGTQPAAMLRLPCYCCAQGCKNNINHPRSKPLKDFRTLQTHFKRKHGSKPFVCRKCAKPFAVKGDWRTHEKNCGKFWYCSCGSDFKHKRSLKDHIRSFGKGHTPRFEDDDDKEYSITTTSASQEC | 303 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4396g00017 | 303 | SUPERFAMILY | beta-beta-alpha zinc fingers | 136 | 168 | IPR036236 | - | |
Pral4396g00017 | 303 | SUPERFAMILY | beta-beta-alpha zinc fingers | 215 | 249 | IPR036236 | - | |
Pral4396g00017 | 303 | Pfam | Zinc finger, C2H2 type | 145 | 164 | IPR013087 | - | |
Pral4396g00017 | 303 | Gene3D | Classic Zinc Finger | 225 | 291 | - | - | |
Pral4396g00017 | 303 | PANTHER | ZINC FINGER PROTEIN WIP2 | 37 | 291 | IPR043584 | GO:0003700|GO:0010468 | |
Pral4396g00017 | 303 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 145 | 172 | IPR013087 | - | |
Pral4396g00017 | 303 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 147 | 167 | IPR013087 | - | |
Pral4396g00017 | 303 | SMART | c2h2final6 | 145 | 167 | IPR013087 | - | |
Pral4396g00017 | 303 | SMART | c2h2final6 | 229 | 249 | IPR013087 | - | |
Pral4396g00017 | 303 | SMART | c2h2final6 | 192 | 224 | IPR013087 | - | |
Pral4396g00017 | 303 | Gene3D | Classic Zinc Finger | 144 | 167 | - | - | |
Pral4396g00017 | 303 | FunFam | Zinc finger protein WIP2 | 198 | 280 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4396g00017 | Pral-Chr4396 | 104804 | 106544 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4396g00017 | 11 | 282 | C2H2 Transcription Factor Family | AT1G08290 | 54.769 | 2.01e-111 | 324 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pral4396g00017 | zf-C2H2 | 0.00048 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4396g00017 | - | - | gmx:100788451 | 409.453 |