Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4396g00012 ATGGCGACCCACAGAATGGGTGAAACTGGTTTATCTGAGTCAGGACCTTCAACTTCAAGTCACCATGCTCCTTATGGGGTTCTTCATGGAATTAGTTCTCCTTCATCTAGCTTAATCAATCAAGGATCTAGTTATTATTTTGGAGGATTGGAAGAGGCAATTCTGCAAGGAGTGAAGATTAGGAACGAAGAAGCCAAAGCATCTTTATTCGCAGGCAAGCCTGCAGCTACACTAGAAATGTTCCCCTCATGGCCCATGAGATTCCAGCACACCCAAAGAGAAATACAGGGAGGTTCAAAATCCGGAGGAGAGAGCACCGATTCAGGATCAGGCCTGAATACTATTTCAAGCAAAACAGAAGCACAGTTTGAACCAGAATCTGAATCTCCCATAAGTAAAAAAGCTTCTTGCACAGATTATCAGGCTTTTGATCAGCAGCAGAAACAGCGGCTACAGCAACTAGAACAGGAGATGGCAAGCGATGCCTCAAGATGCCAAACACAGAATCAGAATGAATCGGCTGCTAAACCATTTCAGGCAAAGAGGAAAGGAGGCGGTTCTACATCAGACAGGCAACTCGATCCAAAGACAATGAGGCGTCTAGCTCAGAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGAAAGAAGGCTTACGTGCAGCAGCTAGAGTCAAGTAGAGTAAAGCTTTCCCAGCTCGAACAAGAGCTTCAAAGAGCACGCTCTCAGGGACTATTGATCGGCTGCGGTGGGACTTCTACTGCCAATAATATAAGTTCCGGTGCAGCAATATTTGACATAGAATATGGGAGATGGTTAGAAGAAGACCAGCGGCACATGGAGGAGCTGCGGCGGAGCTTGGAGGCGGCGGTGCCGGACAATGAACTTAGAGTGATGGTGGAGAGTTATCTGAGACACTACGACGAGGTCTTTGAGCTGAAGGGAGTCGCGGCAAAATCAGATGTGTTTCATGTCATGAACGGAATGTGGACCACCCCCGCTGAGCGTTGCTTCTTCTGGATTGCCGGCTTCCGGCCCTCCGATCTCATTGGGATGTTGGTACAGCAGTTAGAGCCAGTGACGGAGCAGCAGATAGTGGGGATGTATGGGCTGAGGCAGTCGACGCAGCAAGCGGAGGAAGCTCTGACCCAAGGACTCGACCAGCTCCAGCATTCTCTCCTCCACACCGTCGTCGGAGGCCTCACCGTCGACGGCGTTCACCAGATGTTTCTCGCTATGACCAAGCTTTCCGATCTCGAAGATTTTATCCGCCAGGCTGATAATCTAAGACAGCAAACACTTCACCAATTGTGTCGACTACTGACAGTTCGTCAAGCAGCAAAATGTTTTCTCGTGATCGGAGAGTACTATGGTCGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCACGACCACGAGAGTCCCTGATCAACGACGAGACATGCCACCAAATAGCAACGAACATGCCCATAGTTCATCAGTCGTCCCAGAATCATTTCTCGACTTTCTGA 1506 0.4907 MATHRMGETGLSESGPSTSSHHAPYGVLHGISSPSSSLINQGSSYYFGGLEEAILQGVKIRNEEAKASLFAGKPAATLEMFPSWPMRFQHTQREIQGGSKSGGESTDSGSGLNTISSKTEAQFEPESESPISKKASCTDYQAFDQQQKQRLQQLEQEMASDASRCQTQNQNESAAKPFQAKRKGGGSTSDRQLDPKTMRRLAQNREAARKSRLRKKAYVQQLESSRVKLSQLEQELQRARSQGLLIGCGGTSTANNISSGAAIFDIEYGRWLEEDQRHMEELRRSLEAAVPDNELRVMVESYLRHYDEVFELKGVAAKSDVFHVMNGMWTTPAERCFFWIAGFRPSDLIGMLVQQLEPVTEQQIVGMYGLRQSTQQAEEALTQGLDQLQHSLLHTVVGGLTVDGVHQMFLAMTKLSDLEDFIRQADNLRQQTLHQLCRLLTVRQAAKCFLVIGEYYGRLRALSSLWASRPRESLINDETCHQIATNMPIVHQSSQNHFSTF 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4396g00012 501 SMART brlzneu 192 257 IPR004827 GO:0003700|GO:0006355
Pral4396g00012 501 FunFam BZIP family transcription factor 195 244 - -
Pral4396g00012 501 MobiDBLite consensus disorder prediction 94 133 - -
Pral4396g00012 501 Pfam Seed dormancy control 278 353 IPR025422 GO:0006351|GO:0043565
Pral4396g00012 501 PANTHER TRANSCRIPTION FACTOR TGA9 138 472 - -
Pral4396g00012 501 MobiDBLite consensus disorder prediction 148 176 - -
Pral4396g00012 501 Gene3D - 195 244 - -
Pral4396g00012 501 MobiDBLite consensus disorder prediction 148 198 - -
Pral4396g00012 501 Pfam bZIP transcription factor 196 236 IPR004827 GO:0003700|GO:0006355
Pral4396g00012 501 ProSiteProfiles DOG1 domain profile. 261 469 IPR025422 GO:0006351|GO:0043565
Pral4396g00012 501 CDD bZIP_HBP1b-like 196 247 - -
Pral4396g00012 501 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700|GO:0006355
Pral4396g00012 501 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 238 IPR004827 GO:0003700|GO:0006355
Pral4396g00012 501 Coils Coil 151 171 - -
Pral4396g00012 501 Coils Coil 215 242 - -
Pral4396g00012 501 MobiDBLite consensus disorder prediction 1 28 - -
Pral4396g00012 501 SUPERFAMILY Leucine zipper domain 196 238 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4396g00012 Pral-Chr4396 64535 70773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4396g00012 151 501 bZIP Transcription Factor Family AT1G08320 63.636 1.36e-160 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral4396g00012 DOG1 3.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4396g00012 K14431 - gmx:100775461 678.707