Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4396g00010 ATGCCGATTCCTTCTGAGAGGCATTTGTTCCTTCAAAGTGGAAATGGGTCTGGAGATTCTGGACTTGTACTTTCAACTGATGCTAAACCCAGATTGAAATGGACACCAGATCTTCATGCCCGATTTATTGAAGCAGTCAATCAGCTAGGAGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGAATTCCGGGGCTTACTTTATATCATCTTAAGAGCCATCTCCAGAAGTACAGACTGAGCAAGAATCTGCATGGACAAAGTAGCAATGTAACACACAAAATCACAACAAATGCAAGTGCCGTTAGCGGAGAAAGACTTTCTGAAGCAAATGGAACTCACAATCATATGAGCAATCTAACCCTCGGGCCGCAGGCTAATAATAACAAAGATTTACATATAAGCGACGCGTTGCAGATGCAGATTGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTTCAAAGACACTTACAGCTCCGAATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAGGAGACGCTTGGCAGACAGAATTCGGGAGTAGTGGGTCTTGAAGCTGCCAAAGTCCAACTCTCAGAACTAGTGTCCAAAGTATCCTCTCAATGTCTGAGTTCTACTTTTTCAGAGCTGAAGGAACTAAATGCATTTTGCCCCCAGATCAACACACGAACCAACCAACATAATGACTGCTCAATGGACAGTAGCCTCACATCCTGCGAGGGATCTCAAAGGGATCAGGAGATGCCAATTGCTGGCATGTGCTTAACGAGACCTTTTAATGGCCACACCTTCATGGAACCAAATAAGGACGCCGAAGCAAAAAAGAATAATAATTTTCTAAACCCTCTGAGCAAGAATATATCAGAAAGAAGTACTGGCAACTTAACAATGAGCATTGGAGTTGAAGGAGAAACGAGAAATGGAAGCAGCATCTATCCTGAGAGAATAATAATGGGGAGGGAATCAGATAATGAGTTCCAGCACCGAAGCACCAATAATAGAACAGAAGGGATGGAATTAGCAGTGGACGAAAAAGTTTCCGGAGATTATAGATTGCCTTACTTTGCTACACCAAGATTAGACCTTAACACCCGCCAAGAAAACGAAGGTGCAGCCAGTTGTAAACAACTGGACCTGAATGGATTCAGTTGGAACTGA 1185 0.4354 MPIPSERHLFLQSGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSSNVTHKITTNASAVSGERLSEANGTHNHMSNLTLGPQANNNKDLHISDALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNSGVVGLEAAKVQLSELVSKVSSQCLSSTFSELKELNAFCPQINTRTNQHNDCSMDSSLTSCEGSQRDQEMPIAGMCLTRPFNGHTFMEPNKDAEAKKNNNFLNPLSKNISERSTGNLTMSIGVEGETRNGSSIYPERIIMGRESDNEFQHRSTNNRTEGMELAVDEKVSGDYRLPYFATPRLDLNTRQENEGAASCKQLDLNGFSWN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4396g00010 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 11 294 IPR044848 GO:0003700
Pral4396g00010 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 29 84 IPR006447 GO:0003677
Pral4396g00010 394 Pfam MYB-CC type transfactor, LHEQLE motif 136 182 IPR025756 -
Pral4396g00010 394 FunFam Myb family transcription factor 28 86 - -
Pral4396g00010 394 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Pral4396g00010 394 Coils Coil 138 158 - -
Pral4396g00010 394 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Pral4396g00010 394 Gene3D - 28 86 - -
Pral4396g00010 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 86 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4396g00010 Pral-Chr4396 48592 51258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4396g00010 61 394 G2-like Transcription Factor Family AT3G04030 46.459 2.15e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4396g00010 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4396g00010 - - gmx:100810396 531.946