Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4396g00009 ATGTATCATAATCACCAGAGTCACGCAAAGAACATCCATTCTTCTTCTTCCAGAATGCCGATTCCTTCTGAGAGGCATTTGTTCCTTCAAAGTGGAAATGGGTCTGGAGATTCTGGACTTGTACTTTCAACTGATGCTAAACCCAGATTGAAATGGACACCAGATCTTCATGCCCGATTTATTGAAGCAGTCAATCAGCTAGGAGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGAATTCCGGGGCTTACTTTATATCATCTTAAGAGCCATCTCCAGAAGTACAGACTGAGCAAGAATCTGCATGGACAAAGTAGCAATGTAACACACAAAATCACAACAAATGCAAGTGCCGTTAGCGGAGAAAGACTTTCTGAAGCAAATGGAACTCACAATCATATGAGCAATCTAACCCTCGGGCCGCAGGCTAATAATAACAAAGATTTACATATAAGCGACGCGTTGCAGATGCAGATTGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTTCAAAGACACTTACAGCTCCGAATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAGGAGACGCTTGGCAGACAGAATTCGGGAGTAGTGGGTCTTGAAGCTGCCAAAGTCCAACTCTCAGAACTAGTGTCCAAAGTATCCTCTCAATGTCTGAGTTCTACTTTTTCAGAGCTGAAGGAACTAAATGCATTTTGCCCCCAGATCAACACACGAACCAACCAACATAATGACTGCTCAATGGACAGTAGCCTCACATCCTGCGAGGGATCTCAAAGGGATCAGGAGATGCCAATTGCTGGCATGTGCTTAACGAGACCTTTTAATGGCCACACCTTCATGGAACCAAATAAGGACGCCGAAGCAAAAAAGAATAATAATTTTCTAAACCCTCTGAGCAAGAATATATCAGAAAGAAGTACTGGCAACTTAACAATGAGCATTGGAGTTGAAGGAGAAACGAGAAATGGAAGCAGCATCTATCCTGAGAGAATAATAATGGGGAGGGAATCAGATAATGAGTTCCAGCACCGAAGCACCAATAATAGAACAGAAGGGATGGAATTAGCAGTGGACGAAAAAGTTTCCGGAGATTATAGATTGCCTTACTTTGCTACACCAAGATTAGACCTTAACACCCGCCAAGAAAACGAAGGTGCAGCCAGTTGTAAACAACTGGACCTGAATGGATTCAGTTGGAACTGA 1239 0.4334 MYHNHQSHAKNIHSSSSRMPIPSERHLFLQSGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSSNVTHKITTNASAVSGERLSEANGTHNHMSNLTLGPQANNNKDLHISDALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNSGVVGLEAAKVQLSELVSKVSSQCLSSTFSELKELNAFCPQINTRTNQHNDCSMDSSLTSCEGSQRDQEMPIAGMCLTRPFNGHTFMEPNKDAEAKKNNNFLNPLSKNISERSTGNLTMSIGVEGETRNGSSIYPERIIMGRESDNEFQHRSTNNRTEGMELAVDEKVSGDYRLPYFATPRLDLNTRQENEGAASCKQLDLNGFSWN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4396g00009 412 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 312 IPR044848 GO:0003700
Pral4396g00009 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 104 IPR017930 -
Pral4396g00009 412 Pfam Myb-like DNA-binding domain 49 100 IPR001005 -
Pral4396g00009 412 Gene3D - 46 104 - -
Pral4396g00009 412 FunFam Myb family transcription factor 46 104 - -
Pral4396g00009 412 Pfam MYB-CC type transfactor, LHEQLE motif 154 200 IPR025756 -
Pral4396g00009 412 NCBIfam myb-like DNA-binding domain, SHAQKYF class 47 102 IPR006447 GO:0003677
Pral4396g00009 412 SUPERFAMILY Homeodomain-like 46 102 IPR009057 -
Pral4396g00009 412 Coils Coil 156 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4396g00009 Pral-Chr4396 48592 51260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4396g00009 79 412 G2-like Transcription Factor Family AT3G04030 46.459 3.81e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4396g00009 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4396g00009 - - gmx:100810396 555.444