LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4394g00020	ATGGCAGAAATTGAAGTTCCTGAATATTTCGTGTGTCCCATTTCTCTTGAGATCATGAAAGATCCGGTGACGACCGCAACAGGTATAACCTACGACAGAAAGAGCATCGAGCGGTGGTTGCTGACGGCGAAGGAGAGGAAATGTCCAGTCACCAAGCAGCCACTGCTTCCTGACTCAGCCTTGACCCCTAACTCTACCTTACTCAGGTTAATCCAGGCTTGGTCTTCAGGAAACGTTCACAACGGTGTCGTTCGGGTTCCAACCCTGAAACCCCTCTTCACCTCCATCCACGTTCACAAGCTCATTTCGGATCTTCGGATTCCTCATCTGTATGAAACGACATTGAGAAAATTGGATGCTTTGGCCAGACACAGCGAAACCGACAGAAGGTGCATGGTGGAATCTGGAGTACTCGAGGCTATGCTTTCCGTAATTACTCACAGTTTCAATGAAGGTATAACAATTTGCCTTGAAGAAGCTTTGAGAATTTTTCGTTTACTCTGGGCAGCATCGTCATCCACGGCTCACATGAAGCCTCTTTTTTGTGCAAACTTAGACTTTATAACCTGCTTGACCTGGGCTTTGCAAATTGACGCGAGCAACAAAGTTAATATAGTAAATGAAACGATGCCTTCTTTGAAGTCGACCATTGAAGCCGCAGATCCAACTCTTCTGGGAAGCTTAGAGGTTGAATTTTTCAGAGAGATAACAAGGGTGCTAAAAAACAGAAGGGTCTCAGAGCAGGCTATCAAATCAGCCTTGCAGGTTCTCATAGAAACGTGCCCATTGGGAAGAAACCGAACGAAAATCGTAGAATCAGGTGCAGTCTTTGAATTAATTGATCTTGAGTTAGAAAAACCAACAAAGAAGATAACGGAGCTAGTGTTCAACCTTCTGGTGCATCTGTGTTCGTGCGCTGATGGGAGAGAACAGTTTGTGCAACACGCAGCGGGCATCGCCGTGCTGTCAAAGAGGATTCTGAGGGTTTCGAATGCAACTGACGATCGAGCAGTTCATATATTATCGTTGATAGCTAAGCACTCGTCCTCGAATGATGTCGTTTTGGAGATGTTGAGGGTGGGAGCTGTGTCCAAGCTTTGCATGCTGATGCAAGCAGACTGTGCTTCTTACTTGAAGGAAAAAACAAGAAGTATCCTTAGGTTACACTCCAAAACTTGGAATAATTCTCCCTGCATTCAACTATATTTGCTAACCAGGCACCAAAGGTGA	1230	0.4528	MAEIEVPEYFVCPISLEIMKDPVTTATGITYDRKSIERWLLTAKERKCPVTKQPLLPDSALTPNSTLLRLIQAWSSGNVHNGVVRVPTLKPLFTSIHVHKLISDLRIPHLYETTLRKLDALARHSETDRRCMVESGVLEAMLSVITHSFNEGITICLEEALRIFRLLWAASSSTAHMKPLFCANLDFITCLTWALQIDASNKVNIVNETMPSLKSTIEAADPTLLGSLEVEFFREITRVLKNRRVSEQAIKSALQVLIETCPLGRNRTKIVESGAVFELIDLELEKPTKKITELVFNLLVHLCSCADGREQFVQHAAGIAVLSKRILRVSNATDDRAVHILSLIAKHSSSNDVVLEMLRVGAVSKLCMLMQADCASYLKEKTRSILRLHSKTWNNSPCIQLYLLTRHQR	409

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4394g00020	409	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	84	IPR013083	-
	Pral4394g00020	409	Gene3D	-	97	396	IPR011989	-
	Pral4394g00020	409	Pfam	U-box domain	6	78	IPR003613	GO:0004842\|GO:0016567
	Pral4394g00020	409	CDD	RING-Ubox_PUB	7	55	IPR045210	-
	Pral4394g00020	409	SUPERFAMILY	ARM repeat	108	383	IPR016024	-
	Pral4394g00020	409	SMART	Ubox_2	9	74	IPR003613	GO:0004842\|GO:0016567
	Pral4394g00020	409	PANTHER	WDSAM1 PROTEIN	3	400	IPR045185	GO:0061630
	Pral4394g00020	409	ProSiteProfiles	U-box domain profile.	5	81	IPR003613	GO:0004842\|GO:0016567
	Pral4394g00020	409	SUPERFAMILY	RING/U-box	4	75	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4394g00020	Pral-Chr4394	112570	113995	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4394g00020	3	399	U-box Gene Family	AT2G35930	38.155	5.39e-90	276

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4394g00020	-		-	gmx:100787419	509.22

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