Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4394g00020 ATGGCAGAAATTGAAGTTCCTGAATATTTCGTGTGTCCCATTTCTCTTGAGATCATGAAAGATCCGGTGACGACCGCAACAGGTATAACCTACGACAGAAAGAGCATCGAGCGGTGGTTGCTGACGGCGAAGGAGAGGAAATGTCCAGTCACCAAGCAGCCACTGCTTCCTGACTCAGCCTTGACCCCTAACTCTACCTTACTCAGGTTAATCCAGGCTTGGTCTTCAGGAAACGTTCACAACGGTGTCGTTCGGGTTCCAACCCTGAAACCCCTCTTCACCTCCATCCACGTTCACAAGCTCATTTCGGATCTTCGGATTCCTCATCTGTATGAAACGACATTGAGAAAATTGGATGCTTTGGCCAGACACAGCGAAACCGACAGAAGGTGCATGGTGGAATCTGGAGTACTCGAGGCTATGCTTTCCGTAATTACTCACAGTTTCAATGAAGGTATAACAATTTGCCTTGAAGAAGCTTTGAGAATTTTTCGTTTACTCTGGGCAGCATCGTCATCCACGGCTCACATGAAGCCTCTTTTTTGTGCAAACTTAGACTTTATAACCTGCTTGACCTGGGCTTTGCAAATTGACGCGAGCAACAAAGTTAATATAGTAAATGAAACGATGCCTTCTTTGAAGTCGACCATTGAAGCCGCAGATCCAACTCTTCTGGGAAGCTTAGAGGTTGAATTTTTCAGAGAGATAACAAGGGTGCTAAAAAACAGAAGGGTCTCAGAGCAGGCTATCAAATCAGCCTTGCAGGTTCTCATAGAAACGTGCCCATTGGGAAGAAACCGAACGAAAATCGTAGAATCAGGTGCAGTCTTTGAATTAATTGATCTTGAGTTAGAAAAACCAACAAAGAAGATAACGGAGCTAGTGTTCAACCTTCTGGTGCATCTGTGTTCGTGCGCTGATGGGAGAGAACAGTTTGTGCAACACGCAGCGGGCATCGCCGTGCTGTCAAAGAGGATTCTGAGGGTTTCGAATGCAACTGACGATCGAGCAGTTCATATATTATCGTTGATAGCTAAGCACTCGTCCTCGAATGATGTCGTTTTGGAGATGTTGAGGGTGGGAGCTGTGTCCAAGCTTTGCATGCTGATGCAAGCAGACTGTGCTTCTTACTTGAAGGAAAAAACAAGAAGTATCCTTAGGTTACACTCCAAAACTTGGAATAATTCTCCCTGCATTCAACTATATTTGCTAACCAGGCACCAAAGGTGA 1230 0.4528 MAEIEVPEYFVCPISLEIMKDPVTTATGITYDRKSIERWLLTAKERKCPVTKQPLLPDSALTPNSTLLRLIQAWSSGNVHNGVVRVPTLKPLFTSIHVHKLISDLRIPHLYETTLRKLDALARHSETDRRCMVESGVLEAMLSVITHSFNEGITICLEEALRIFRLLWAASSSTAHMKPLFCANLDFITCLTWALQIDASNKVNIVNETMPSLKSTIEAADPTLLGSLEVEFFREITRVLKNRRVSEQAIKSALQVLIETCPLGRNRTKIVESGAVFELIDLELEKPTKKITELVFNLLVHLCSCADGREQFVQHAAGIAVLSKRILRVSNATDDRAVHILSLIAKHSSSNDVVLEMLRVGAVSKLCMLMQADCASYLKEKTRSILRLHSKTWNNSPCIQLYLLTRHQR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4394g00020 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Pral4394g00020 409 Gene3D - 97 396 IPR011989 -
Pral4394g00020 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Pral4394g00020 409 CDD RING-Ubox_PUB 7 55 IPR045210 -
Pral4394g00020 409 SUPERFAMILY ARM repeat 108 383 IPR016024 -
Pral4394g00020 409 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Pral4394g00020 409 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Pral4394g00020 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Pral4394g00020 409 SUPERFAMILY RING/U-box 4 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4394g00020 Pral-Chr4394 112570 113995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4394g00020 3 399 U-box Gene Family AT2G35930 38.155 5.39e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4394g00020 - - gmx:100787419 509.22