Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4394g00019 ATGGATGAAATCGATGTTCCTTCTCATTTTCTCTGCCCCATTTCCTTGCAGCTCATGAGAGACCCCGTCACGGTGCGCACCGGAATCACTTACGACAGAGAAAACATTGAGAGATGGCTGTTTTCGTGCAAGAACAGGACGTGCCCTGTGACGAAGCAGTCCATTTTAGATGCAGATCTCACGCCAAACCACACGCTTCGACGTCTGATCCAGGCTTGGTGCACCCTTAACGCCTCGTTTGGGATCGAGCGTATTCCGACTCCGAAGCCACCCATTGAGAGAATCCAGATCGCGAAACTCCTCTCCGAAGCAAACCAGTCCCCGCACAACCATCTTAAATGCCTCAGAAGGCTTCGATCCATCGCTTTCGAAAGCGACAGGAACAGGATTTATTTGGAGTCTGCGGGGGCAATAGAATTCTTGGCTTCGACCTTGAAGTTTAGCAGTATAGAATCGCAAGTCAACTACGATGATGATGAATGTACCACCGCTATGGGTAGTGTAGCAGCACTTGAGGTTCTGTACCATCTAAATCCTTCAGAATCTCACGTCAAGAATCTAGTCAGCAACGAGAGCATTAAATTCATCGAGTCCTTGATCCAAATCCTGAGGAGAGGGAACTACCAATCCCGAGCTTACGCAACAATATTACTAAAATCAGCGTTCGGAGTGGCAGATCCAACCCAACTGATCAATGTGAGAACAGAGTTGTTCGTGGAACTCATGAGGGTGTTGCGAGATAAGATTTCACAGAAAGCTTCAAAGGCAGCACTGAAGCTATTGGTGGAGCTGAGTCCATGGGGGAAGAACAGAATCAAAGCGGTGGAAGGCGGCGTGGTTTTGGTGCTGATAGAGATGCTTCTGGAAGCATCGGAGAGAAGAGCGTGCGAACTGATTCTCATAGCGTTGGATCAACTGTGCGGGTGTGCGGAAGGAAGAGCAGAGTTGGTGAAGCACGGTGCCGGAGTGGCCATTGTGTCGAAGAAGATTCTGAGGGTATCACACATGGCAACCGATAGATGTGTGAAGATATTGAGCTCAATCTGTAGGTACTCGGCGAATGGGAGGGTGGTTCAGGAAATGTTGCAGGTGGGTGCGGTTTGTAAGCTGTGTTTAGTGCTTCAGGTGGAAGCAAGCTTGAAGACGAAGGAAAGGGCCAAGGAGGTTCTGAGATTGCACTCCAGCGTTTGGAGGAATTCCGCATGTATTCCTCCTCCTCTGCTCAAATCCTATCCTTCGTCTAATTAA 1248 0.4904 MDEIDVPSHFLCPISLQLMRDPVTVRTGITYDRENIERWLFSCKNRTCPVTKQSILDADLTPNHTLRRLIQAWCTLNASFGIERIPTPKPPIERIQIAKLLSEANQSPHNHLKCLRRLRSIAFESDRNRIYLESAGAIEFLASTLKFSSIESQVNYDDDECTTAMGSVAALEVLYHLNPSESHVKNLVSNESIKFIESLIQILRRGNYQSRAYATILLKSAFGVADPTQLINVRTELFVELMRVLRDKISQKASKAALKLLVELSPWGKNRIKAVEGGVVLVLIEMLLEASERRACELILIALDQLCGCAEGRAELVKHGAGVAIVSKKILRVSHMATDRCVKILSSICRYSANGRVVQEMLQVGAVCKLCLVLQVEASLKTKERAKEVLRLHSSVWRNSACIPPPLLKSYPSSN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4394g00019 415 CDD RING-Ubox_PUB 7 60 IPR045210 -
Pral4394g00019 415 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Pral4394g00019 415 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Pral4394g00019 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Pral4394g00019 415 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Pral4394g00019 415 SUPERFAMILY ARM repeat 195 390 IPR016024 -
Pral4394g00019 415 SUPERFAMILY RING/U-box 3 77 - -
Pral4394g00019 415 Gene3D - 95 405 IPR011989 -
Pral4394g00019 415 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Pral4394g00019 415 FunFam RING-type E3 ubiquitin transferase 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4394g00019 Pral-Chr4394 105371 106780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4394g00019 2 412 U-box Gene Family AT2G35930 52.530 3.95e-154 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4394g00019 - - gmx:100778012 602.823